PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.5G044000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB_related | ||||||||
Protein Properties | Length: 251aa MW: 26724.4 Da PI: 7.1129 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.9 | 2.4e-18 | 83 | 127 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r ++++eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ + Seita.5G044000.1.p 83 RRAFSEEEEERLLAAHRAYGNK-WALIARLFP-GRTDNAVKNHWHVL 127 678*******************.*********.***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.9E-17 | 74 | 135 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-19 | 77 | 131 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 27.733 | 78 | 132 | IPR017930 | Myb domain |
SMART | SM00717 | 8.8E-16 | 82 | 130 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-15 | 83 | 127 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.80E-8 | 94 | 128 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MAHEMAAFFG AAPPPPAALA PFRDEQRHRD AADEVYHVDD VEDGDAGHGH GGGGGQGKLC 60 ARGHWRPAED AKLKELLDPR INRRAFSEEE EERLLAAHRA YGNKWALIAR LFPGRTDNAV 120 KNHWHVLMAR KQREQSGALR RRKTSSSSSS SPGPAPPQHY APVVVLHHHH YSGSPPLPFH 180 AAATATAAGA HGVPTEAAAA DTRAYSGGES DESASTCTTD LSLGSAPCFY QSAYNPGYDA 240 APRAAAFAPS A |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-14 | 77 | 131 | 53 | 107 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269|PubMed:20305120}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.5G044000.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding. {ECO:0000269|PubMed:20305120}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022682305.1 | 1e-118 | transcription factor CSA-like | ||||
Swissprot | Q5NBM8 | 7e-57 | CSA_ORYSJ; Transcription factor CSA | ||||
TrEMBL | A0A368R153 | 0.0 | A0A368R153_SETIT; Uncharacterized protein (Fragment) | ||||
STRING | Pavir.J31094.1.p | 1e-102 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP294 | 38 | 260 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 3e-29 | myb domain protein 105 |
Link Out ? help Back to Top | |
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Phytozome | Seita.5G044000.1.p |