PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G043900.1.p
Common NameSETIT_005038mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB
Protein Properties Length: 323aa    MW: 34911 Da    PI: 8.1096
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G043900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.82.2e-1763108147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg W + Ed +l+++v+q+G+ +W++Ia+++  gR++k+c++rw++ 
  Seita.5G043900.1.p  63 RGHWRPAEDAKLKELVAQHGPQNWNLIAEKLD-GRSGKSCRLRWFNQ 108
                         899*****************************.***********996 PP
2Myb_DNA-binding56.56.2e-18115158146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         r ++++eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ 
  Seita.5G043900.1.p 115 RRAFSEEEEERLLAAHRAYGNK-WALIARLFP-GRTDNAVKNHWHV 158
                         678*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.52558109IPR017930Myb domain
SMARTSM007172.4E-1462111IPR001005SANT/Myb domain
SuperFamilySSF466895.62E-2863156IPR009057Homeodomain-like
PfamPF002492.0E-1663108IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-2664116IPR009057Homeodomain-like
CDDcd001679.03E-1466107No hitNo description
PROSITE profilePS5129426.73110164IPR017930Myb domain
SMARTSM007175.0E-15114162IPR001005SANT/Myb domain
PfamPF002494.6E-15115158IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-20117161IPR009057Homeodomain-like
CDDcd001677.62E-8126159No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MAHDHEMVCF SGRAPPAAAL YPFRFHHHQE QEQAVVSEEV YHGHVEDPEE ISCGRGQGKL  60
CARGHWRPAE DAKLKELVAQ HGPQNWNLIA EKLDGRSGKS CRLRWFNQLD PRINRRAFSE  120
EEEERLLAAH RAYGNKWALI ARLFPGRTDN AVKNHWHVLA ARRQREQSGA LRRRKPSSCS  180
LSSLATAPTH AVAVAVHHHY SSPPPPFHAG GARIQHDIHT EAAAAATRAH SGGESEESAS  240
TCTTDLSLGS VGAAAVPCFY QSSYDGCDMA PCAAAPTPAA LAPSARSAFS VCSPARHRAA  300
ASDNGCGKLA RPFFDFLGVG AT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-31611635107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269|PubMed:20305120}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G043900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding. {ECO:0000269|PubMed:20305120}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0613681e-149BT061368.1 Zea mays full-length cDNA clone ZM_BFb0140D17 mRNA, complete cds.
GenBankEU9677751e-149EU967775.1 Zea mays clone 305974 mRNA sequence.
GenBankHQ8587991e-149HQ858799.1 Zea mays clone UT1886 MYB transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967704.10.0transcription factor CSA
SwissprotQ5NBM87e-89CSA_ORYSJ; Transcription factor CSA
TrEMBLA0A368R1H20.0A0A368R1H2_SETIT; Uncharacterized protein
STRINGSi005038m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.15e-57myb domain protein 105
Publications ? help Back to Top
  1. Leonard LM,Follette VM
    Sexual functioning in women reporting a history of child sexual abuse: review of the empirical literature and clinical implications.
    Annu Rev Sex Res, 2002. 13: p. 346-88
    [PMID:12836736]
  2. Wang L,Li X,Chen Z
    Sulfated modification of the polysaccharides obtained from defatted rice bran and their antitumor activities.
    Int. J. Biol. Macromol., 2009. 44(2): p. 211-4
    [PMID:19135473]
  3. Wang L,Huang H,Wei Y,Li X,Chen Z
    Characterization and anti-tumor activities of sulfated polysaccharide SRBPS2a obtained from defatted rice bran.
    Int. J. Biol. Macromol., 2009. 45(4): p. 427-31
    [PMID:19549538]
  4. Zhang H, et al.
    Carbon starved anther encodes a MYB domain protein that regulates sugar partitioning required for rice pollen development.
    Plant Cell, 2010. 22(3): p. 672-89
    [PMID:20305120]
  5. Zhang H, et al.
    Mutation in CSA creates a new photoperiod-sensitive genic male sterile line applicable for hybrid rice seed production.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(1): p. 76-81
    [PMID:23256151]
  6. Zhu X, et al.
    Brassinosteroids promote development of rice pollen grains and seeds by triggering expression of Carbon Starved Anther, a MYB domain protein.
    Plant J., 2015. 82(4): p. 570-81
    [PMID:25754973]
  7. Li X, et al.
    Metabolic and transcriptomic signatures of rice floral organs reveal sugar starvation as a factor in reproductive failure under heat and drought stress.
    Plant Cell Environ., 2015. 38(10): p. 2171-92
    [PMID:25828772]
  8. Shaar-Moshe L,Hübner S,Peleg Z
    Identification of conserved drought-adaptive genes using a cross-species meta-analysis approach.
    BMC Plant Biol., 2015. 15: p. 111
    [PMID:25935420]