PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.5G038900.1.p | ||||||||
Common Name | LOC101770845, SETIT_002195mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | bZIP | ||||||||
Protein Properties | Length: 331aa MW: 36678.2 Da PI: 7.7986 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 31.9 | 2.9e-10 | 44 | 86 | 3 | 45 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 + k rr+++NReAAr+sR+RKka++++Le+ +L++ ++L Seita.5G038900.1.p 44 DQKTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQEL 86 56889*************************9877777766555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.5E-8 | 36 | 89 | No hit | No description |
SMART | SM00338 | 4.2E-8 | 42 | 105 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.438 | 44 | 88 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 3.0E-7 | 45 | 86 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.31E-7 | 46 | 89 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 49 | 64 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 7.6E-34 | 128 | 203 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009410 | Biological Process | response to xenobiotic stimulus | ||||
GO:0009627 | Biological Process | systemic acquired resistance | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MADVSPRTET STDDTDDNHG LEPGPGALVA ASDSSDRSKD KHEDQKTLRR LAQNREAARK 60 SRLRKKAYVQ QLENSRLKLT QLEQELQRAR QQGIFISSSV DQSHSMSGNG ALAFDMEYAR 120 WLEEHNRQIS ELRAGVTAHA SDSDLRSVVD KIMSHYDEIF RLKGNAAKAD VFHVLSGMWK 180 TPAERCFLWL GGFRPSEVLK LLSTQLEPLT EQQLSGIGNL QQSSQQAEDA LSQGMEALQQ 240 SLAETLAGSL SSSGSTGNVA NYMGQMAMAM GKLGTLENFL RQADNLRLQT LQQMQRILTT 300 RQAARALLVI SDYSSRLRAL SSLWLARPKE * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00349 | DAP | Transfer from AT3G12250 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.5G038900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT036137 | 0.0 | BT036137.1 Zea mays full-length cDNA clone ZM_BFb0097M11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012701959.1 | 0.0 | transcription factor TGA2.3 isoform X1 | ||||
Refseq | XP_012701960.1 | 0.0 | transcription factor TGA2.3 isoform X1 | ||||
Refseq | XP_012701961.1 | 0.0 | transcription factor TGA2.3 isoform X1 | ||||
Swissprot | P23923 | 0.0 | HBP1B_WHEAT; Transcription factor HBP-1b(c38) | ||||
TrEMBL | K3XJX2 | 0.0 | K3XJX2_SETIT; Uncharacterized protein | ||||
STRING | Si002195m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP486 | 38 | 185 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12250.2 | 1e-146 | TGACG motif-binding factor 6 |
Link Out ? help Back to Top | |
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Phytozome | Seita.5G038900.1.p |
Entrez Gene | 101770845 |
Publications ? help Back to Top | |||
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