PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.5G036500.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 217aa MW: 24504.8 Da PI: 8.4898 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 83.9 | 1e-26 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n +nrqvtfskRr g++KKA EL +LCda+v +i+fs tg+lye+ s Seita.5G036500.3.p 10 RIDNRTNRQVTFSKRRSGLMKKARELAILCDADVGLIVFSCTGRLYEFTS 59 9***********************************************75 PP | |||||||
2 | K-box | 35.2 | 5.4e-13 | 85 | 158 | 12 | 98 |
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++a+ +q e+a L+++++nLq++ ++Lq L++q+e sl+++R+kK++ll e+i +l kk lq+en +L+k++ Seita.5G036500.3.p 85 SEAKFWQMEVATLRQQVQNLQNN-------------NRDLQFLQSQIEISLQSVRKKKEQLLAEEIMQLNKKGIVLQKENVELKKEV 158 6789*****************99.............579*********************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.1E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.342 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.39E-40 | 2 | 75 | No hit | No description |
SuperFamily | SSF55455 | 4.58E-32 | 2 | 78 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.4E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 8.487 | 68 | 164 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.0E-9 | 85 | 158 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MGRGKIAIQR IDNRTNRQVT FSKRRSGLMK KARELAILCD ADVGLIVFSC TGRLYEFTSS 60 SMKPIIERYQ EAREDNNCRL LNPISEAKFW QMEVATLRQQ VQNLQNNNRD LQFLQSQIEI 120 SLQSVRKKKE QLLAEEIMQL NKKGIVLQKE NVELKKEVSI AHQHKIELQK LSGESTSSGD 180 GDQESGSSDK VPSRSTGHDA SEHINLALSI EGHPDE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 4e-22 | 1 | 87 | 1 | 87 | MEF2C |
5f28_B | 4e-22 | 1 | 87 | 1 | 87 | MEF2C |
5f28_C | 4e-22 | 1 | 87 | 1 | 87 | MEF2C |
5f28_D | 4e-22 | 1 | 87 | 1 | 87 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.5G036500.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022682317.1 | 1e-159 | MADS-box transcription factor 25 isoform X2 | ||||
Swissprot | Q84NC5 | 2e-92 | MAD25_ORYSJ; MADS-box transcription factor 25 | ||||
TrEMBL | A0A368R129 | 1e-157 | A0A368R129_SETIT; Uncharacterized protein | ||||
STRING | Pavir.J07457.1.p | 1e-135 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57230.1 | 6e-55 | AGAMOUS-like 16 |
Link Out ? help Back to Top | |
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Phytozome | Seita.5G036500.3.p |
Publications ? help Back to Top | |||
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