PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G036500.2.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MIKC_MADS
Protein Properties Length: 230aa    MW: 25991.5 Da    PI: 8.0885
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G036500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.71.1e-261059251
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        ri+n +nrqvtfskRr g++KKA EL +LCda+v +i+fs tg+lye+ s
  Seita.5G036500.2.p 10 RIDNRTNRQVTFSKRRSGLMKKARELAILCDADVGLIVFSCTGRLYEFTS 59
                        9***********************************************75 PP
2K-box80.24.9e-27851711298
               K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                         ++a+ +q e+a L+++++nLq+++R+l+Ge+L++L++++Lq L++q+e sl+++R+kK++ll e+i +l kk   lq+en +L+k++
  Seita.5G036500.2.p  85 SEAKFWQMEVATLRQQVQNLQNNNRKLMGEELSDLTIRDLQFLQSQIEISLQSVRKKKEQLLAEEIMQLNKKGIVLQKENVELKKEV 171
                         6789********************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.1E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.342161IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.23E-32278IPR002100Transcription factor, MADS-box
CDDcd002651.91E-40275No hitNo description
PRINTSPR004041.5E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003198.2E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-273859IPR002100Transcription factor, MADS-box
PfamPF014862.6E-2485171IPR002487Transcription factor, K-box
PROSITE profilePS5129714.16387177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MGRGKIAIQR IDNRTNRQVT FSKRRSGLMK KARELAILCD ADVGLIVFSC TGRLYEFTSS  60
SMKPIIERYQ EAREDNNCRL LNPISEAKFW QMEVATLRQQ VQNLQNNNRK LMGEELSDLT  120
IRDLQFLQSQ IEISLQSVRK KKEQLLAEEI MQLNKKGIVL QKENVELKKE VSIAHQHKIE  180
LQKLSGESTS SGDGDQESGS SDKVPSRSTG HDASEHINLA LSIEGHPDE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A6e-22187187MEF2C
5f28_B6e-22187187MEF2C
5f28_C6e-22187187MEF2C
5f28_D6e-22187187MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G036500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967658.11e-168MADS-box transcription factor 25 isoform X1
RefseqXP_022682316.11e-168MADS-box transcription factor 25 isoform X1
SwissprotQ84NC51e-102MAD25_ORYSJ; MADS-box transcription factor 25
TrEMBLA0A368R0W51e-167A0A368R0W5_SETIT; Uncharacterized protein
STRINGPavir.J07457.1.p1e-148(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.11e-66AGAMOUS-like 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  3. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]