PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.5G034000.3.p | ||||||||
Common Name | LOC101757582, SETIT_000698mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | bHLH | ||||||||
Protein Properties | Length: 620aa MW: 66206.9 Da PI: 6.6782 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 49.5 | 7.8e-16 | 370 | 416 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+k Lq Seita.5G034000.3.p 370 VHNLSERRRRDRINEKMRALQELIPNC-----NKIDKASMLDEAIEYLKTLQ 416 5*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.67E-17 | 363 | 420 | No hit | No description |
SuperFamily | SSF47459 | 1.83E-20 | 364 | 425 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.981 | 366 | 415 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.3E-20 | 370 | 424 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.6E-13 | 370 | 416 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.1E-17 | 372 | 421 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009704 | Biological Process | de-etiolation | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0010017 | Biological Process | red or far-red light signaling pathway | ||||
GO:0031539 | Biological Process | positive regulation of anthocyanin metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 620 aa Download sequence Send to blast |
MSDGNEFAEL LWENGQAVVH GRRKQTQTSF PPFTCAAASS SRAQEKQPGS DPVALFKTGG 60 VFGAGGLVTS VHDFSSGLDA TRDNGDLDDT VPWIHYPIIE EDSAAAPALA ESYSPDFFSE 120 LHAAAAAAAA TNPSSLPPPI QHTTNNRSTP IATTSREPEP SKESHRMPVP GPATRPEPPQ 180 AEFAATKQTR LGGGAEGLMN FSLFSRPAAM ARASLQSAQR PPQTGTDKAS NVTTSTRVES 240 TVLQSSIGPR TTPVFTDQRT AWSQPKEVRF SCTAAPTAGN LQQEMPRDRL GSMTLQKQVK 300 TRKEPEAAVA TSSVCSGNGA GIGNDESWRQ HKRKSQAECS ASQDDDLEDE SGGARRSGSR 360 GTKRSRTAEV HNLSERRRRD RINEKMRALQ ELIPNCNKID KASMLDEAIE YLKTLQLQVQ 420 MMSMGSGLCI PPMLLPPTMQ HLQIPQIAHF PHLGMGLGYG MGVFDMNSSP AVPFPSMPGA 480 HFPCSMIPGT TAQGLGMPGR NTVPMFGLPG QAIHPSASSV QPFPSLAGLP VRPNLAPQVS 540 AAMANMVQEQ HQDVATQQQQ NMNSEARQGT NTGDPELQTI LQVENQHFSV PSSAQTESGP 600 FLDSGGNRTD TAGRNGAER* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 374 | 379 | ERRRRD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may act as negative regulator of phyB-dependent light signal transduction. {ECO:0000269|PubMed:17485859}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00081 | ChIP-seq | Transfer from AT1G09530 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.5G034000.3.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by light in dark-grown etiolated seedlings. {ECO:0000269|PubMed:17485859}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022682498.1 | 0.0 | transcription factor APG isoform X2 | ||||
Swissprot | Q0JNI9 | 0.0 | PIL15_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15 | ||||
TrEMBL | K3XFM9 | 0.0 | K3XFM9_SETIT; Uncharacterized protein | ||||
STRING | Si000700m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 1e-44 | phytochrome interacting factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Seita.5G034000.3.p |
Entrez Gene | 101757582 |
Publications ? help Back to Top | |||
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