PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.5G034000.1.p | ||||||||
Common Name | LOC101757582, SETIT_000698mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | bHLH | ||||||||
Protein Properties | Length: 622aa MW: 66491.2 Da PI: 6.7945 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 49.5 | 7.9e-16 | 372 | 418 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+k Lq Seita.5G034000.1.p 372 VHNLSERRRRDRINEKMRALQELIPNC-----NKIDKASMLDEAIEYLKTLQ 418 5*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.69E-17 | 365 | 422 | No hit | No description |
SuperFamily | SSF47459 | 1.83E-20 | 366 | 427 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.981 | 368 | 417 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.3E-20 | 372 | 426 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.6E-13 | 372 | 418 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.1E-17 | 374 | 423 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009704 | Biological Process | de-etiolation | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0010017 | Biological Process | red or far-red light signaling pathway | ||||
GO:0031539 | Biological Process | positive regulation of anthocyanin metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 622 aa Download sequence Send to blast |
MRQSDGNEFA ELLWENGQAV VHGRRKQTQT SFPPFTCAAA SSSRAQEKQP GSDPVALFKT 60 GGVFGAGGLV TSVHDFSSGL DATRDNGDLD DTVPWIHYPI IEEDSAAAPA LAESYSPDFF 120 SELHAAAAAA AATNPSSLPP PIQHTTNNRS TPIATTSREP EPSKESHRMP VPGPATRPEP 180 PQAEFAATKQ TRLGGGAEGL MNFSLFSRPA AMARASLQSA QRPPQTGTDK ASNVTTSTRV 240 ESTVLQSSIG PRTTPVFTDQ RTAWSQPKEV RFSCTAAPTA GNLQQEMPRD RLGSMTLQKQ 300 VKTRKEPEAA VATSSVCSGN GAGIGNDESW RQHKRKSQAE CSASQDDDLE DESGGARRSG 360 SRGTKRSRTA EVHNLSERRR RDRINEKMRA LQELIPNCNK IDKASMLDEA IEYLKTLQLQ 420 VQMMSMGSGL CIPPMLLPPT MQHLQIPQIA HFPHLGMGLG YGMGVFDMNS SPAVPFPSMP 480 GAHFPCSMIP GTTAQGLGMP GRNTVPMFGL PGQAIHPSAS SVQPFPSLAG LPVRPNLAPQ 540 VSAAMANMVQ EQHQDVATQQ QQNMNSEARQ GTNTGDPELQ TILQVENQHF SVPSSAQTES 600 GPFLDSGGNR TDTAGRNGAE R* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 376 | 381 | ERRRRD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that may act as negative regulator of phyB-dependent light signal transduction. {ECO:0000269|PubMed:17485859}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00081 | ChIP-seq | Transfer from AT1G09530 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.5G034000.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by light in dark-grown etiolated seedlings. {ECO:0000269|PubMed:17485859}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004967640.1 | 0.0 | transcription factor APG isoform X1 | ||||
Refseq | XP_004967641.1 | 0.0 | transcription factor APG isoform X1 | ||||
Refseq | XP_004967642.1 | 0.0 | transcription factor APG isoform X1 | ||||
Refseq | XP_004967643.1 | 0.0 | transcription factor APG isoform X1 | ||||
Refseq | XP_004967644.1 | 0.0 | transcription factor APG isoform X1 | ||||
Refseq | XP_022682497.1 | 0.0 | transcription factor APG isoform X1 | ||||
Refseq | XP_022682498.1 | 0.0 | transcription factor APG isoform X2 | ||||
Swissprot | Q0JNI9 | 0.0 | PIL15_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15 | ||||
TrEMBL | A0A368R0Z8 | 0.0 | A0A368R0Z8_SETIT; Uncharacterized protein | ||||
STRING | Si000700m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3527 | 37 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 1e-44 | phytochrome interacting factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Seita.5G034000.1.p |
Entrez Gene | 101757582 |
Publications ? help Back to Top | |||
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