PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G032600.1.p
Common NameLOC101786345, SETIT_000824mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 575aa    MW: 59720.1 Da    PI: 6.9637
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G032600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.14.8e-30284342259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dg++WrKYGqK+ kg+++pr+YYrCt+a  Cpv+k+v+r+aed++++++tYeg+Hnh+
  Seita.5G032600.1.p 284 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvACPVRKQVQRCAEDKTILVTTYEGHHNHP 342
                         7****************************9****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-32268344IPR003657WRKY domain
SuperFamilySSF1182904.05E-27276344IPR003657WRKY domain
PROSITE profilePS5081128.759278344IPR003657WRKY domain
SMARTSM007742.0E-35283343IPR003657WRKY domain
PfamPF031061.9E-25285342IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
METKKPERHC HDHVHDEEES QEGEDAPAME HGALSLHRGA TLFGQRHHEE AAAGRRGEIR  60
EVDFFSRDSG ARQQDDGGGG RRVTGGGRDD LNIGLDLLTT ATAATASAGE EVTAAKNHKM  120
EASAVEAELR RVVDENRRLR GMLEELTRSY GTLYQQLLQV TQHHPHQHQH PDLMNNRSSL  180
PHTHLNTMGA PNTSTRQLLE ARASSTAQTQ PDAGVEDEAS DGAGEASPSL SNNAGNNDSD  240
GKRKLSQDGT APSRENGEQA SSAELPGRKA RVSVRARSEA PMISDGCQWR KYGQKMAKGN  300
PCPRAYYRCT MAVACPVRKQ VQRCAEDKTI LVTTYEGHHN HPLPPAATTM ANTTSAAASM  360
LLSGPATSRD GAAALLGHPA ALFHHHASIP YASTMATLSA SAPFPTITLD LTQAPGSGGG  420
VGGLLGHGLQ RPPVGMIHPA AAPAMPFPVP SPLAMFLPQR APPTAAAVPA GLVARQPQQQ  480
QSVMETVTAA IAADPNFTTA LAAAISSVMA GAGGAHHQAQ PTPRGSNNTG IAGEADGSAA  540
GAAPAAPTTT AAGAHAASGG SPRFATQSCT TSTT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-21274344877Probable WRKY transcription factor 4
2lex_A2e-21274344877Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17886GGRRVTGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G032600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967624.10.0probable WRKY transcription factor 31
TrEMBLK3XG050.0K3XG05_SETIT; Uncharacterized protein
STRINGSi000824m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43583260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.15e-61WRKY family protein