PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G030800.2.p
Common NameLOC101778672, SETIT_000259mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family SBP
Protein Properties Length: 881aa    MW: 98220.2 Da    PI: 7.1245
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G030800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP121.83.1e-38131207278
                         -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         Cqv+gC+adls a++yh+rhkvCe+h++++vv+++++e+rfCqqCsrfh l+efDe+k+sCr+rLakhn rrrk q+
  Seita.5G030800.2.p 131 CQVDGCHADLSGARDYHKRHKVCEAHTRTSVVCIKNVEHRFCQQCSRFHLLQEFDEGKKSCRSRLAKHNGRRRKGQP 207
                         **************************************************************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.2E-31123192IPR004333Transcription factor, SBP-box
PROSITE profilePS5114130.718128205IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.83E-35129208IPR004333Transcription factor, SBP-box
PfamPF031101.1E-28131204IPR004333Transcription factor, SBP-box
SuperFamilySSF484031.56E-5652759IPR020683Ankyrin repeat-containing domain
CDDcd002047.11E-5654759No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 881 aa     Download sequence    Send to blast
MEAGFLWKES GDQAGAARMS GGHNKNKNKS LEWDLNDWRW DANLFLATPA AAAPSECSSR  60
ELSRAQGEID FGVVVDKRRR LSPEEDGSAG CSNDSAVANG DNGHVVSVQR RRSSEEERRR  120
KGASSSTPPS CQVDGCHADL SGARDYHKRH KVCEAHTRTS VVCIKNVEHR FCQQCSRFHL  180
LQEFDEGKKS CRSRLAKHNG RRRKGQPQGA VVGNPTNENK SLSSALFLLL KQLSGLESGS  240
SSGQINHPNY LVNLLKNLAA VASTQAYQDI LNNANSNPTS NAGNNAANGS TMHELTIQSI  300
PVGSEPLAGP PVKKRVQDFD LNDACIEEVE RRTDKIVFKL FGKEPKDFPV DLREQILNWL  360
SHCPTDMESY IRPGCVILTV YLRLPNWMWD ELDDDPAPWI EKLISMSNDG FWRTGWVYAR  420
VQECLTLSCN GRLMLASPWQ PVIGDRLQRL CVTPIAVACS STAKFCVQGF NIVQPTTKLL  480
CVFGEKYLIQ EETQTLLEDT TRQQGRQCLT FSCSFPSTSG RGFIEVEDYD QSSLSVPFVV  540
TDKDVCSEIR MLEHELDLSS FDETSERIGD LMASRSRALH FLQEIGWLLQ RSHMQATSEQ  600
RQYSTEGFSV ERFRWLLSFA IDQEWCAVVN KLLNTMFRGD IGLDVPSPVE FALGENLLLT  660
AVNKRSKPLV QFLLRYTITN YAPDIDPVQF LFTPDMTGPS NITPLHIAAT ISDTTGVLDA  720
LTDDPQQLGI KVWKTARDDT GLTPEDYAQK RGHISYIQMV QDKIDRRLPK AHVSVAIPSR  780
PSATDTITKH ASHLKSTDQT AFDVEKSARS IINQPLSCGQ CVHQLAYRPR TNRFFSTRPA  840
MLSLVAIAAV CVCVGLIMKS PPQVSSMKPF LWEKITWGPN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-25123204384squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17680KRRRL
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G030800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014660814.10.0squamosa promoter-binding-like protein 1
SwissprotQ9LGU70.0SPL1_ORYSJ; Squamosa promoter-binding-like protein 1
TrEMBLA0A368R0M40.0A0A368R0M4_SETIT; Uncharacterized protein
STRINGSi000259m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.11e-134squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang H,Zhai J,Mo J,Li D,Song F
    Overexpression of rice sphingosine-1-phoshpate lyase gene OsSPL1 in transgenic tobacco reduces salt and oxidative stress tolerance.
    J Integr Plant Biol, 2012. 54(9): p. 652-62
    [PMID:22889013]
  3. Zhang H, et al.
    Molecular characterization of rice sphingosine-1-phosphate lyase gene OsSPL1 and functional analysis of its role in disease resistance response.
    Plant Cell Rep., 2014. 33(10): p. 1745-56
    [PMID:25113543]