PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G030500.1.p
Common NameLOC101777179, SETIT_004106mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 357aa    MW: 38741.9 Da    PI: 6.7059
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G030500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.74.9e-09162204754
                         HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         + E++RR+r+ ++++ L  l+P++     +K + a++   A+eYI++L
  Seita.5G030500.1.p 162 KKEKQRRQRLTEKYNALMLLIPNR-----TKDDRATVISDAIEYIQEL 204
                         57*********************9.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.874155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-5161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-6162204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.51E-10164228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-8164224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.97E-6164204No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MYHPQCELLM AHETRDLDAG QPHLTASAGV ATIPSELSFH LLHSLDAAAA VAPQPTIDYF  60
FGGAADPHQP AVQYEPLAAG HQHTMNMLRD YCNGHYTAAA EPFLRGARTG ALVFGATDDE  120
SAAYMPMPFE SSPPPRATSG RKRSRALLGG GFHGGPAGGV EKKEKQRRQR LTEKYNALML  180
LIPNRTKDDR ATVISDAIEY IQELGRTVEE LTLLVEKKRR RMELQGDVVD AAPAVAVAAA  240
AAGEAESSEG EVAPPPPAVQ RQPIRSTYIQ RRSKDTSVDV RIVEEDVNIK LTKRRRDGCL  300
AAASRALDDL RLELVHLSGG KIGDCHIYMF NTKIHPSSPV FASAVASRLM EVVDDY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139145GRKRSRA
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the E-box-containing promoter regions of the transcription factors TDR and EAT1, activating their expression. May have a role in specifying the cell pattern of the inner anther walls and functioning in meiosis progression. Required for male reproduction (PubMed:24755456). Acts downstream of UDT1 and GAMYB, but upstream of TDR1 and EAT1 in pollen development (PubMed:24894043). {ECO:0000269|PubMed:24755456, ECO:0000269|PubMed:24894043}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G030500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0643920.0BT064392.1 Zea mays full-length cDNA clone ZM_BFc0164O20 mRNA, complete cds.
GenBankBT0645730.0BT064573.1 Zea mays full-length cDNA clone ZM_BFc0184C05 mRNA, complete cds.
GenBankBT0689060.0BT068906.1 Zea mays full-length cDNA clone ZM_BFc0190J24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967599.10.0transcription factor TIP2
SwissprotQ5JNS01e-160TIP2_ORYSJ; Transcription factor TIP2
TrEMBLK3XQC30.0K3XQC3_SETIT; Uncharacterized protein
STRINGSi004106m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19043796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.19e-26bHLH family protein