PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.5G015800.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 354aa    MW: 37924 Da    PI: 4.3098
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.5G015800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.87.5e-20115165155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         ++++GVr+++ +g+++AeIrd +     r  r++lg+f+taeeAak ++ a+ +l+g
  Seita.5G015800.1.p 115 PRFRGVRRRP-WGKYAAEIRDpW-----RrVRVWLGTFDTAEEAAKVYDSAAIQLRG 165
                         689*******.**********88.....55*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.7E-12115165IPR001471AP2/ERF domain
CDDcd000181.17E-28115175No hitNo description
SMARTSM003802.7E-35116179IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-21116173IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.6E-29116174IPR001471AP2/ERF domain
PROSITE profilePS5103223.301116173IPR001471AP2/ERF domain
PRINTSPR003674.5E-10117128IPR001471AP2/ERF domain
PRINTSPR003674.5E-10139155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MWAMEEEMFV AVRRTEHVEV TSRAVEVAPA AAAGPRTVRV FCDDYDATDS SGDEDDEEAA  60
VAARRRVKRY VQEIRLERAV KEAPAAKAAA SSAAAAARTK LVLPGRKRKA DGAEPRFRGV  120
RRRPWGKYAA EIRDPWRRVR VWLGTFDTAE EAAKVYDSAA IQLRGPDATT NFEQVDDPVP  180
TEVAERLPQP PPAAASKNAS SSATSYDSGE ESHAAAASPT SVLRSFPPSA VAEDTCGKKP  240
APAAQPAYRA PETDESSVDG SVFGCPFTGD DCFGGEFPPL YTDFDLLADF PEPSLDFLAD  300
LPEEPLSLPS MSAGTSAAGE SSPEPASPAG WLQVDDFFQD ITDLFQIDPL PVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-19112172971Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.5G015800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9424211e-116EU942421.1 Zea mays clone 1496106 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967470.10.0ethylene-responsive transcription factor CRF1
TrEMBLA0A368R0310.0A0A368R031_SETIT; Uncharacterized protein
STRINGSi002247m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16903697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.22e-28cytokinin response factor 2