PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.5G002200.1.p | ||||||||
Common Name | SETIT_005134mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | LBD | ||||||||
Protein Properties | Length: 182aa MW: 19478.1 Da PI: 9.8918 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 98.8 | 5.5e-31 | 14 | 115 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee..redamsslvyeAearardPvyGavgvilklqqqleq 89 aCa+Ck++rrkC+++C la yfpa+++++f+++h +FG++n++kl+ +++ ++ r++a+++l++eA++r rdP +G+++ + l+++ + Seita.5G002200.1.p 14 ACAVCKHQRRKCEPNCELAAYFPAHRMNDFRALHLVFGVANLTKLIIKANATDaaRRRAAETLTWEARWRERDPAEGCYREVACLRRDNAL 104 7*******************************************99887544435************************************ PP DUF260 90 lkaelallkee 100 l+a+ a+l+++ Seita.5G002200.1.p 105 LRADNAALRRQ 115 ***99998877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 20.392 | 13 | 116 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.5E-27 | 14 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MTGGGNGGGG GGGACAVCKH QRRKCEPNCE LAAYFPAHRM NDFRALHLVF GVANLTKLII 60 KANATDAARR RAAETLTWEA RWRERDPAEG CYREVACLRR DNALLRADNA ALRRQLADHH 120 HLLLCWSSTT NNMAAGGGNG QLVAVRPPPP SHAPAPPPAA AAMRDHPSIS SRDNKSSNPR 180 C* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-16 | 10 | 116 | 7 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-16 | 10 | 116 | 7 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.5G002200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU970523 | 3e-97 | EU970523.1 Zea mays clone 346868 ramosa 2 mRNA, complete cds. | |||
GenBank | EU973222 | 3e-97 | EU973222.1 Zea mays clone 395148 ramosa 2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004967330.1 | 1e-130 | LOB domain-containing protein 15 | ||||
TrEMBL | A0A368R008 | 1e-129 | A0A368R008_SETIT; Uncharacterized protein | ||||
STRING | Si005134m | 1e-128 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13044 | 28 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06280.1 | 1e-15 | LOB domain-containing protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Seita.5G002200.1.p |