PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.5G001500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | bHLH | ||||||||
Protein Properties | Length: 187aa MW: 19827.7 Da PI: 11.9147 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.2 | 0.00067 | 122 | 159 | 13 | 55 |
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R ++ +++ L +l+P + +Kl + Le+Av+Y+ Lq Seita.5G001500.1.p 122 RGKVQERLRVLGRLVPGC-----RKLPAPDLLEEAVDYVAALQ 159 567778888999999998.....8***************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.172 | 109 | 158 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.49E-8 | 115 | 175 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.2E-7 | 122 | 173 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009742 | Biological Process | brassinosteroid mediated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MISSSSSPPS SSSSSNKPPP PPPQQASKWR SGTQHKIYGR RLLDALRATG GGQPRAVKAA 60 ADSALALTAR GQTRWSRAIL LAGAACSRRR VLVKAGGKIR RRHRRPNKSS KAASFSQEEE 120 GRGKVQERLR VLGRLVPGCR KLPAPDLLEE AVDYVAALQM QVSTMRALAD ALAAAQLSDD 180 AGAAER* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.5G001500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004967324.1 | 1e-129 | transcription factor bHLH150-like | ||||
TrEMBL | A0A368QZZ8 | 1e-127 | A0A368QZZ8_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Ia00876.1.p | 3e-81 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1658 | 5 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06590.2 | 4e-12 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.5G001500.1.p |