PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.4G286100.1.p

Common Name

LOC101778263, SETIT_006994mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

NAC

Protein Properties

Length: 302aa MW: 33570.3 Da PI: 8.7315

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.4G286100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	146.3	1.7e-45	17	145	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgk..rknratksgyWkatgkdke 91 pGfrFhPt+eel+ +yLk+ + gkkl++ ++i++v++y+++Pw+Lp ++ +e+ewyfF++rd+k+a g r++r+t++g+Wkatg+d++ Seita.4G286100.1.p 17 PGFRFHPTEEELLEFYLKQVAYGKKLKF-DIIPTVQLYRHDPWELPGLARIGEREWYFFVPRDRKQAVGGsgRPSRTTERGFWKATGSDRA 106 9************************9.99***********8778899*********964334*************** PP NAM 92 vlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 v ++ ++l+glkktLv+y+grap+g+ktdWvm+eyrl Seita.4G286100.1.p 107 VRCAadPKRLIGLKKTLVYYEGRAPRGTKTDWVMNEYRL 145 98777788***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.02E-52	14	173	IPR003441	NAC domain
PROSITE profile	PS51005	52.437	15	173	IPR003441	NAC domain
Pfam	PF02365	9.3E-24	17	145	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MRSHSSSVGG AAELELPGFR FHPTEEELLE FYLKQVAYGK KLKFDIIPTV QLYRHDPWEL 60 PGLARIGERE WYFFVPRDRK QAVGGSGRPS RTTERGFWKA TGSDRAVRCA ADPKRLIGLK 120 KTLVYYEGRA PRGTKTDWVM NEYRLPDVVV DNGAAAGNSS PKEDIVLCKI YRKAVSLKEL 180 EQRVAMEELA RASASATPSA SHNTGSPADS MSSSDQQGET TTMMMMGGVA IPSLATICMK 240 KEVVTESTAA VLRPATLSLP QLEVAKQPAQ QQEWMQDPFL TQLRSPWMES WSPYYASVLN 300 F*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-47	12	173	11	168	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.4G286100.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004966508.1	0.0	NAC domain-containing protein 67
Swissprot	Q10S65	1e-104	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	K3XYI6	0.0	K3XYI6_SETIT; Uncharacterized protein
STRING	Si006994m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1770	38	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	4e-83	NAC domain containing protein 36

Link Out ? help Back to Top
Phytozome	Seita.4G286100.1.p
Entrez Gene	101778263

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]