PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.4G277900.1.p
Common NameLOC101781884, SETIT_006993mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family DBB
Protein Properties Length: 302aa    MW: 31087.8 Da    PI: 4.9953
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.4G277900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.32.3e-06446541
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                         C+ ++ +++   C  ++  lC  C  + H+       H+++p
  Seita.4G277900.1.p  4 HCDVCGAEPAAVLCCADEAALCSACDRSVHRAnklahkHRRIP 46
                        7*****************************7799996666665 PP
2zf-B_box24.36.4e-0861101337
            zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 
                         ++ C+ ++e +   fC +++  lC+dC + +H+       H
  Seita.4G277900.1.p  61 APLCDVCKERRGLVFCVEDRAILCADCDDPIHSAndltakH 101
                         579*****************************655555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.765147IPR000315B-box-type zinc finger
SMARTSM003363.2E-9147IPR000315B-box-type zinc finger
CDDcd000212.75E-7347No hitNo description
PROSITE profilePS501199.34359106IPR000315B-box-type zinc finger
SMARTSM003362.8E-1559106IPR000315B-box-type zinc finger
PfamPF006431.4E-562102IPR000315B-box-type zinc finger
CDDcd000211.06E-663106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MLVHCDVCGA EPAAVLCCAD EAALCSACDR SVHRANKLAH KHRRIPLLQP SGDSSPAAAA  60
APLCDVCKER RGLVFCVEDR AILCADCDDP IHSANDLTAK HSRFLLVGAK LSAALVDQSL  120
PSPDDCGRGN GTGEPDGVAA AICAQDSCTA KSSALDCSNS YGAGAVGGSS SSSISDYLTN  180
ICPGWRVDDL LFDDAAFSAA SNAGCDEHEQ VPSLDADLFD VVAGRPGKRG AWYGGGAWYG  240
GGALGLEKVS AASIAVPTAA KQQGRVRERH WSCDSDSDVF AVPEISPQPL AKKARPPATS  300
F*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.4G277900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0384501e-117BT038450.1 Zea mays full-length cDNA clone ZM_BFb0234M06 mRNA, complete cds.
GenBankEU9680731e-117EU968073.1 Zea mays clone 313792 salt tolerance-like protein mRNA, complete cds.
GenBankHQ8587761e-117HQ858776.1 Zea mays clone UT1762 ORPHAN transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012701127.10.0B-box zinc finger protein 20
TrEMBLK3XYI50.0K3XYI5_SETIT; Uncharacterized protein
STRINGSi006993m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121002430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39070.13e-38DBB family protein