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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Seita.4G271000.1.p |
Common Name | LOC101753515, SETIT_006602mg |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family |
C3H |
Protein Properties |
Length: 396aa MW: 43357.9 Da PI: 8.6841 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Seita.4G271000.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 33.1 | 9.6e-11 | 5 | 26 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25
+elCr+f+r G CkyG++C+F H
Seita.4G271000.1.p 5 HELCRNFQR-GSCKYGAQCRFVH 26
79*******.************* PP
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Sequence ? help Back to Top |
Protein Sequence Length: 396 aa
Download sequence Send
to blast |
MNRRHELCRN FQRGSCKYGA QCRFVHASSQ QQQQQQQQQV KPNPFGFGSG SRQQQQQPSF 60 GAQFQQQQQQ QQQQQKPNPF GFGVQGAAKP FQNKWVRDPS APTKQPEAAQ PPPAAHTSCT 120 DPESCRQQIA EDFKNETPLW KLTCYAHLRS GPCDIKGDIS FEELRAKAYE DGRQGHPLQS 180 IVEGERNLQN AKLMEFTNFL NNPRVSVSQT PSFPTVASFP EVKNNPSFGV PQTSGPPVFS 240 SFSQVGAGNN FGPGPRTAPG NPTNTLFGQP VQASLPAFPA PTFGRSDMKF GVSGSFGSQV 300 SQQPSAGSSM SNVGNFPKPP AGYQQSASSS HHRDIDRQSQ DLLSGIVAPT SALNQAPVED 360 NKNENQDDSI WLKEKWSIGE IPLGEPPQRH ISHVF*
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Functional Description ? help
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Source |
Description |
UniProt | Transcriptional activator that binds double-stranded DNA and the single-stranded RNA polymers poly(rA), poly(rU) and poly(rG), but not poly(rC). Mediates optimal plant architecture through brassinosteroid (BR) signaling. May act as a negative regulator in sterol homeostasis (PubMed:18953406). Acts as negative regulator of BR signaling. Binds to the specific DNA sequence 5'-CTCGC-3' of BZR1 promoter and negatively regulates BZR1. Acts as an antagonistic transcription factor of BZR1 to attenuate the BR signaling pathway and regulate leaf bending. Represses the expression of ILI1, and activates that of IBH1 to balance the regulation activity of BZR1 (PubMed:22570626). {ECO:0000269|PubMed:18953406, ECO:0000269|PubMed:22570626}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by 24-epibrassinolide. {ECO:0000269|PubMed:18953406, ECO:0000269|PubMed:22570626}. |