PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.4G268200.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 238aa MW: 26408.8 Da PI: 4.6922 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.1 | 2e-27 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien rqvtfskRr+g+lKKA+EL vLCd++v v++fs++gkl+ey+ Seita.4G268200.2.p 9 KRIENRVSRQVTFSKRRKGLLKKAHELAVLCDVDVGVVVFSERGKLFEYP 58 79***********************************************8 PP | |||||||
2 | K-box | 48.1 | 5.2e-17 | 78 | 157 | 5 | 83 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLs.lkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 + +++ ++++++ e+ +L++e+++L+ ++ + Ge L+s + eL +Le+qLe +l+k+R++K+ell++ +e+q k Seita.4G268200.2.p 78 QLQETPCTDHQQMIAEIGRLRREYQQLEANLMAYTGEYLSSVApVDELDELERQLEMALSKVRARKDELLMNLKDEQQLK 157 4555566789*******************************97479**************************99999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 30.389 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.0E-36 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.89E-30 | 2 | 86 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.68E-37 | 2 | 80 | No hit | No description |
PRINTS | PR00404 | 9.5E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.3E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.5E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.5E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.3E-13 | 85 | 151 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 11.672 | 87 | 180 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MGRGKVELKR IENRVSRQVT FSKRRKGLLK KAHELAVLCD VDVGVVVFSE RGKLFEYPDP 60 PASLTDLIRR YEAVNNTQLQ ETPCTDHQQM IAEIGRLRRE YQQLEANLMA YTGEYLSSVA 120 PVDELDELER QLEMALSKVR ARKDELLMNL KDEQQLKING RGPHDAAATG EEGMEEEMAE 180 PAPAPSPSFA YLLNVNEKSA ASTMLQLWPQ TDGDDDDVGT AGGGSSSPPP PRGLQLW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 3e-16 | 1 | 58 | 1 | 58 | MEF2C |
5f28_B | 3e-16 | 1 | 58 | 1 | 58 | MEF2C |
5f28_C | 3e-16 | 1 | 58 | 1 | 58 | MEF2C |
5f28_D | 3e-16 | 1 | 58 | 1 | 58 | MEF2C |
6byy_A | 3e-16 | 1 | 82 | 1 | 87 | MEF2 CHIMERA |
6byy_B | 3e-16 | 1 | 82 | 1 | 87 | MEF2 CHIMERA |
6byy_C | 3e-16 | 1 | 82 | 1 | 87 | MEF2 CHIMERA |
6byy_D | 3e-16 | 1 | 82 | 1 | 87 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.4G268200.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FN552482 | 1e-47 | FN552482.1 Pennisetum glaucum AFLP fragment RQVTKKA2-4. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025811394.1 | 1e-118 | MADS-box transcription factor 30-like | ||||
Swissprot | Q655V4 | 2e-54 | MAD30_ORYSJ; MADS-box transcription factor 30 | ||||
TrEMBL | A0A368QYM7 | 1e-174 | A0A368QYM7_SETIT; Uncharacterized protein | ||||
STRING | Si007187m | 1e-131 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23260.2 | 3e-30 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.4G268200.2.p |