PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.4G268200.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MIKC_MADS
Protein Properties Length: 239aa    MW: 26536.9 Da    PI: 4.6922
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.4G268200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.12e-27958150
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                        krien   rqvtfskRr+g+lKKA+EL vLCd++v v++fs++gkl+ey+
  Seita.4G268200.1.p  9 KRIENRVSRQVTFSKRRKGLLKKAHELAVLCDVDVGVVVFSERGKLFEYP 58
                        79***********************************************8 PP
2K-box47.95.6e-1781158883
               K-box   8 s.leeakaeslqqelakLkkeienLqreqRhllGedLesLs.lkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 
                         +  ++ +++++  e+ +L++e+++L+ ++  + Ge L+s   + eL +Le+qLe +l+k+R++K+ell++  +e+q k
  Seita.4G268200.1.p  81 EtPCTDHQQQMIAEIGRLRREYQQLEANLMAYTGEYLSSVApVDELDELERQLEMALSKVRARKDELLMNLKDEQQLK 158
                         336788899******************************97479**************************99999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.389161IPR002100Transcription factor, MADS-box
SMARTSM004321.0E-36160IPR002100Transcription factor, MADS-box
CDDcd002651.69E-37280No hitNo description
SuperFamilySSF554551.15E-29283IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003197.4E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-283859IPR002100Transcription factor, MADS-box
PfamPF014866.2E-1485152IPR002487Transcription factor, K-box
PROSITE profilePS5129711.60988181IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MGRGKVELKR IENRVSRQVT FSKRRKGLLK KAHELAVLCD VDVGVVVFSE RGKLFEYPDP  60
PASLTDLIRR YEAVNNTQLQ ETPCTDHQQQ MIAEIGRLRR EYQQLEANLM AYTGEYLSSV  120
APVDELDELE RQLEMALSKV RARKDELLMN LKDEQQLKIN GRGPHDAAAT GEEGMEEEMA  180
EPAPAPSPSF AYLLNVNEKS AASTMLQLWP QTDGDDDDVG TAGGGSSSPP PPRGLQLW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-16158158MEF2C
5f28_B3e-16158158MEF2C
5f28_C3e-16158158MEF2C
5f28_D3e-16158158MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.4G268200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFN5524821e-47FN552482.1 Pennisetum glaucum AFLP fragment RQVTKKA2-4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811394.11e-120MADS-box transcription factor 30-like
SwissprotQ655V49e-54MAD30_ORYSJ; MADS-box transcription factor 30
TrEMBLA0A368QYR31e-175A0A368QYR3_SETIT; Uncharacterized protein
STRINGSi007187m1e-133(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP185037100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.26e-31MIKC_MADS family protein