PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.4G266800.1.p | ||||||||
Common Name | LOC101771222, SETIT_006824mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB_related | ||||||||
Protein Properties | Length: 343aa MW: 37091.7 Da PI: 7.3233 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.2 | 8.1e-13 | 81 | 125 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+ E++++++a +++ + Wk+I +++g +t q++s+ qky Seita.4G266800.1.p 81 RESWTEPEHDKFLEALQLFDRD-WKKIEAYVG-SKTVIQIRSHAQKY 125 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.44E-16 | 75 | 131 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.628 | 76 | 130 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 1.3E-18 | 79 | 128 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 8.3E-6 | 80 | 121 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-10 | 80 | 128 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-10 | 81 | 125 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.84E-8 | 83 | 126 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MVSMSTTPKP LDSAAANAAA VVAGGDDGEG GGGKQQQQQR MQGAAAVMAP PPMAVPALAP 60 APAAGEEVRK VRKPYTITKS RESWTEPEHD KFLEALQLFD RDWKKIEAYV GSKTVIQIRS 120 HAQKYFLKVQ KNGTGEHLPP PRPKRKAAHP YPQKASKNVS QAVLSQQLSP RREQGSVMSM 180 DTSTAVRNAN ANAAVPSWDN TLVQPFSASH VQGAVATNNC SSSIESPSGT WPTSEAVEQE 240 NVVPPLRAMP DFARVYSFLG SIFDPDTSGH LQRLKAMDPI DVETVLLLMR NLSTNLTSPD 300 FEEHRKLLSS YSYGSDDHIK SEGMDNLGSP QSCHLPFMVT SE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.4G266800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004966305.1 | 0.0 | protein REVEILLE 6 | ||||
Swissprot | Q8H0W3 | 4e-98 | RVE6_ARATH; Protein REVEILLE 6 | ||||
TrEMBL | K3XY16 | 0.0 | K3XY16_SETIT; Uncharacterized protein | ||||
STRING | Si006824m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1096 | 38 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52660.2 | 2e-84 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.4G266800.1.p |
Entrez Gene | 101771222 |
Publications ? help Back to Top | |||
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