PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.4G261400.1.p | ||||||||
Common Name | LOC101767992, SETIT_006555mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB | ||||||||
Protein Properties | Length: 413aa MW: 44559.9 Da PI: 7.3337 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.4 | 5.9e-17 | 19 | 66 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed+llvd v+++G g+W+++ r+ g+ R++k+c++rw ++l Seita.4G261400.1.p 19 KGPWTQAEDKLLVDHVRRHGEGNWNAVRRETGLQRCGKSCRLRWANHL 66 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 47.9 | 3.2e-15 | 72 | 115 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++++eE+ ++++++ + G++ W++I+++++ gRt++++k++w++ Seita.4G261400.1.p 72 KGPFSPEEERQILRLHGLIGNK-WARISSHLP-GRTDNEIKNYWNT 115 79********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.775 | 14 | 66 | IPR017930 | Myb domain |
SMART | SM00717 | 1.6E-13 | 18 | 68 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.87E-30 | 18 | 113 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.6E-15 | 19 | 66 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.4E-22 | 20 | 74 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.16E-12 | 21 | 66 | No hit | No description |
PROSITE pattern | PS00175 | 0 | 34 | 43 | IPR001345 | Phosphoglycerate/bisphosphoglycerate mutase, active site |
PROSITE profile | PS51294 | 25.6 | 67 | 121 | IPR017930 | Myb domain |
SMART | SM00717 | 7.2E-16 | 71 | 119 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-14 | 72 | 115 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.63E-11 | 74 | 117 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-24 | 75 | 120 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003824 | Molecular Function | catalytic activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 413 aa Download sequence Send to blast |
MARSGGGGVE GCGGGVLKKG PWTQAEDKLL VDHVRRHGEG NWNAVRRETG LQRCGKSCRL 60 RWANHLRPNL RKGPFSPEEE RQILRLHGLI GNKWARISSH LPGRTDNEIK NYWNTRLKRR 120 QRAGLPLYPP DIEREIALLR AQNINPFADA DGNANSGLPP PLLYDANNPF ALPPAVPSPS 180 GSATASHSPL INQSYPLLNQ MQGMPVFHLA SSQQSPQPVF HHHQDNGAAL GHGGFVSSGL 240 PPLPTRAHEL PSNQFDTSSS GGGAGLLESL LLGDDHLPRH IPTMVKVNSM PALTYREPGS 300 CRLPVHGAGA GSDSDETSHC LPGEDMHHGA KWNFTYEDFK PAKRRTPSEA GISDMFGVAP 360 GFIPGDWFSA CGGSTAPSPG PSSAVTDDEF GLEMQQFMSL LPLSIDEHSW NA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-28 | 17 | 120 | 5 | 107 | B-MYB |
1h8a_C | 1e-28 | 17 | 120 | 25 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.4G261400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK373804 | 1e-158 | AK373804.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3044A21. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004966214.1 | 0.0 | transcription factor GAMYB | ||||
TrEMBL | K3XX97 | 0.0 | K3XX97_SETIT; Uncharacterized protein | ||||
STRING | Si006555m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12397 | 26 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06100.1 | 5e-59 | myb domain protein 33 |
Link Out ? help Back to Top | |
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Phytozome | Seita.4G261400.1.p |
Entrez Gene | 101767992 |