PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.4G238100.1.p
Common NameLOC101777855, SETIT_006875mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HSF
Protein Properties Length: 330aa    MW: 35502 Da    PI: 5.3365
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.4G238100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind97.91e-30441342101
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         F+ k++e++e+++++ ++sw +  nsfvv+d++ fa  +Lp+ Fkh nf+ F+RQLn+YgF+kv+ ++         weF+h  F +g+++
  Seita.4G238100.1.p  44 FVAKTFELVENPATDGVVSWGAARNSFVVWDPHAFAAVLLPRLFKHANFSTFLRQLNTYGFRKVSPDR---------WEFAHADFLAGQRH 125
                         9********************999******************************************99.........************** PP

                         XXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkk 101
                         ll +i+r++
  Seita.4G238100.1.p 126 LLANIRRRR 134
                         *******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.5E-5040133IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.0E-3341133IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.99E-3141133IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.4E-2744133IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.0E-154467IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.0E-158294IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.0E-1595107IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MDHPAAATVK QQDELLVVLD TDGDAGGRAG AAPEPWKLAA VPPFVAKTFE LVENPATDGV  60
VSWGAARNSF VVWDPHAFAA VLLPRLFKHA NFSTFLRQLN TYGFRKVSPD RWEFAHADFL  120
AGQRHLLANI RRRRGAAGVG CKAAKTASIA TGSGGREKEL EKLRREREAL ARELARLRRE  180
QQEARAQLRD VERRVRGTER RQEQCAAAFL ARAVGDPAAA DETGRKRRRL DADATSTTPG  240
VADVLAFVEL ALAAGAEAES APMPAVASAH STGAATNLDM VWNELLGEEP VAIDAKADQE  300
LAAAAVEPWE EMSGEEALEL VEIDCLASP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-223913315120Heat shock factor protein 1
5d5u_B1e-223913324129Heat shock factor protein 1
5d5v_B1e-223913324129Heat shock factor protein 1
5d5v_D1e-223913324129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224228RKRRR
2225229KRRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.4G238100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3727017e-78AK372701.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3009M23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966067.10.0putative heat stress transcription factor A-6a
SwissprotQ5Z6A44e-88HFA6A_ORYSJ; Putative heat stress transcription factor A-6a
TrEMBLK3XY670.0K3XY67_SETIT; Uncharacterized protein
STRINGSi006875m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.17e-53heat shock transcription factor A2