PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.4G238000.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family M-type_MADS
Protein Properties Length: 320aa    MW: 34272.6 Da    PI: 5.8098
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.4G238000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.81.6e-144387145
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                        k ie+ s r+v fskR  g++K A EL   C+a va+++fs  gk
  Seita.4G238000.1.p 43 KLIESRSARYVCFSKRHDGLFKNAVELAARCGAHVAIVVFSRAGK 87
                        569***************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006621.3343595IPR002100Transcription factor, MADS-box
SMARTSM004328.1E-183594IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.1E-2136107IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-123757IPR002100Transcription factor, MADS-box
PfamPF003191.3E-184590IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-125772IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-127293IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MEDETEVVAM TAPEAEAESV CGEAGGERKR KKKTLGRQKI EIKLIESRSA RYVCFSKRHD  60
GLFKNAVELA ARCGAHVAIV VFSRAGKPYS IGYPSVNPVV DRYLDPASAS AAAPCAAAVA  120
RLAPILREYE SEKERLEKAM KAEVIKRKAL DAAARAAGVR AADDDVCRAG IPELLAMLAA  180
LERVQAEAAE RVREATVEEV MMQHVRAVGA SDHAFHYPTA GAFTADSGAG SSHPDPGAMD  240
AQTTMLMGGD VDHAPMHFAS MMLPTYYLPP PPLNYGSNHN QLAGYGYNYD LGDGSGHDAA  300
NELEGYYYYG TTTTCNFFG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12731RKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.4G238000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813008.14e-85MADS-box protein AGL71-like
TrEMBLA0A368QXI00.0A0A368QXI0_SETIT; Uncharacterized protein
STRINGSi008680m1e-162(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133092432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.19e-20AGAMOUS-like 61