PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.4G237900.2.p
Common NameLOC101777442, SETIT_006775mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HSF
Protein Properties Length: 354aa    MW: 37825.3 Da    PI: 4.5202
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.4G237900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind97.21.7e-30451352101
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         F+ k++e++ed++++ ++sw +  nsfvv+d++ fa  +Lp+ Fkh nf+ F+RQLn+YgF+kv+ ++         weF+h  F +g+++
  Seita.4G237900.2.p  45 FVAKTFELVEDPATDGVVSWGAARNSFVVWDPHAFAAGLLPRRFKHANFSTFLRQLNTYGFRKVSPDR---------WEFAHADFLAGQRH 126
                         9********************999******************************************99.........************** PP

                         XXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkk 101
                         ll +i+r++
  Seita.4G237900.2.p 127 LLANIRRRR 135
                         *******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004156.6E-5141134IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.35E-3141134IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.1E-3342134IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.2E-154568IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.6E-2745134IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-158395IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-1596108IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MENPTAVTVK QEEEDEVVVV LDAGGRAGAA PEPWQPATAP AVPPFVAKTF ELVEDPATDG  60
VVSWGAARNS FVVWDPHAFA AGLLPRRFKH ANFSTFLRQL NTYGFRKVSP DRWEFAHADF  120
LAGQRHLLAN IRRRRGAAGG STASGPPSSC EKDGASGSGG VRESELERLR RDREALALEL  180
ARLRRGQQEA RAQLLDMECR VRGTERRQEQ CTAFLARAVG NPGFLDGLLA RRGHAPVEAG  240
RKRRLLDASA AAAPDAADVL AFEELALAAG AVVEADPVPA VTAASQSPSS TATATDMIWY  300
ELLGEEQVEI DAEVEELVAA AAAAEVAEPW EEMGDEEVEE LVQQIGCLGS PSP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A3e-24421347110Heat shock factor protein 1
5hdn_A3e-24421347110Heat shock factor protein 1
5hdn_B3e-24421347110Heat shock factor protein 1
5hdn_C3e-24421347110Heat shock factor protein 1
5hdn_D3e-24421347110Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167172RLRRDR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.4G237900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022681569.10.0putative heat stress transcription factor A-6a
SwissprotQ5Z6A41e-102HFA6A_ORYSJ; Putative heat stress transcription factor A-6a
TrEMBLK3XXW70.0K3XXW7_SETIT; Uncharacterized protein
STRINGSi006775m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-47heat shock transcription factor A2