PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.4G234800.1.p | ||||||||
Common Name | LOC101767991, SETIT_006733mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | GATA | ||||||||
Protein Properties | Length: 363aa MW: 38549.7 Da PI: 8.9262 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 54.7 | 1.4e-17 | 180 | 213 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs C+ttkTplWR+gp g+k+LCnaCG+++rk + Seita.4G234800.1.p 180 CSDCNTTKTPLWRSGPCGPKSLCNACGIRQRKAR 213 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 2.09E-13 | 171 | 216 | No hit | No description |
PROSITE profile | PS50114 | 12.334 | 174 | 210 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 4.3E-16 | 174 | 225 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 3.4E-14 | 178 | 213 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.46E-15 | 179 | 228 | No hit | No description |
Pfam | PF00320 | 2.7E-15 | 180 | 213 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 180 | 205 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0009910 | Biological Process | negative regulation of flower development | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0010255 | Biological Process | glucose mediated signaling pathway | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MSAIYMSQLS TALPLMEGDH HQDHHHHQGH FQAFNLPKDP PILFPFVISN SSASDSSLSY 60 GSGDHHHLFR QQNQAMLEPQ HMIGVSSAAS VFATPFPTVE SIRDDMIEPS SYDPYDMGRL 120 QVGGSLETAG SWTTPPAKMR ITRKASTDPG AAKKPRRKVQ GYEDMMGTSG QPNLGVNRVC 180 SDCNTTKTPL WRSGPCGPKS LCNACGIRQR KARRAMMASA GGSGPAPADG AKAATATPRD 240 AMAASVHHPK VKKEKRIDVD RSLPFKKRCK VVQDHAPVAA PPAAAHKAAA VPPTGEVVDA 300 SGLSSRDLVD DIGLISWSRS PAPPSSAASC SFRSSPGLPV QQDEVTDAAM LLMTLSCGLV 360 RS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (By similarity). Influences the expression of nuclear encoded chloroplast-targeted genes. Regulates chloroplast development and promotes chlorophyll accumulation. Modulates plant architecture (e.g. height, length and width of leaf blades, and flowering tillers production) and represses tillering, probably by modulating number of cells. Promotes senescence. Involved in grain filling, panicle development and starch production (PubMed:23548780). {ECO:0000250|UniProtKB:Q9SZI6, ECO:0000269|PubMed:23548780}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.4G234800.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by light, nitrogen, and cytokinin (benzyladenine) treatments, but repressed by darkness and gibberellin (GA). {ECO:0000269|PubMed:23548780}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004966043.1 | 0.0 | putative GATA transcription factor 22 | ||||
Swissprot | Q6YW48 | 2e-72 | CGA1_ORYSJ; Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1 | ||||
TrEMBL | K3XXS5 | 0.0 | K3XXS5_SETIT; Uncharacterized protein | ||||
STRING | Si006733m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1893 | 38 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56860.1 | 6e-18 | GATA family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.4G234800.1.p |
Entrez Gene | 101767991 |
Publications ? help Back to Top | |||
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