PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.4G221900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB | ||||||||
Protein Properties | Length: 543aa MW: 59942.4 Da PI: 4.5887 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.8 | 3e-19 | 65 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+d+v+ +G g+W+ + r g++R++k+c++rw ++l Seita.4G221900.1.p 65 KGPWTPEEDKRLKDYVEAHGEGNWNQVQRNAGLNRCGKSCRLRWANHL 112 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 42.8 | 1.2e-13 | 118 | 161 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++ +eE +++++ + ++G++ W++ a++++ gRt++++k++w++ Seita.4G221900.1.p 118 KGPFDAEEVDKIIKFHMMWGNK-WAKMASHLP-GRTDNEIKNYWNT 161 799*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.829 | 60 | 116 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.49E-30 | 62 | 159 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.6E-16 | 64 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.3E-17 | 65 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-24 | 66 | 119 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.73E-12 | 67 | 112 | No hit | No description |
PROSITE profile | PS51294 | 17.488 | 117 | 167 | IPR017930 | Myb domain |
SMART | SM00717 | 5.4E-15 | 117 | 165 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.4E-13 | 118 | 161 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.70E-10 | 120 | 163 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-23 | 120 | 165 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 543 aa Download sequence Send to blast |
MTVKVEQDPA LELPPNTEAG AGAEFSQPLS SGKEEEENDD DEDDETDSVG YDGAGNGGGA 60 PQLKKGPWTP EEDKRLKDYV EAHGEGNWNQ VQRNAGLNRC GKSCRLRWAN HLRPDLKKGP 120 FDAEEVDKII KFHMMWGNKW AKMASHLPGR TDNEIKNYWN TRLKRHQRAN LPLYPEHLCS 180 RVLDQDMNRH IPDESRGKKR SNELTQEKVV GMDDLVGDLM VFQHLDYGKD PVVPTNPLKR 240 HASTGDLSYV QSLDKVENFY SNDLNYVLTK SQSVPLGSAT ANGYPIFDGN PSTSGTIHRS 300 KKTGLPSFQC SSYEFSNSWL LQCPTASLIE QQLDTCIQSP ESMSSQNTGL LGEIVNKGDA 360 LDDCTKSERL FETVFPPLGY NIVSQSNAYP MRHPSSSVIG DCEPEACLFD EIQASNSPSA 420 GSDAIFAYGK CYPDASFSDA RMPGTSLEAG FLNDDPLSKD QSYPYLSSSL FDADSSQEPK 480 LLTDAGQWLD SFAWKSMPGA CNMPDFPGLS SSLLGNQGYG QHILEEPKND LLQQPRLPTG 540 FN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-28 | 59 | 165 | 1 | 106 | B-MYB |
1h8a_C | 1e-27 | 61 | 165 | 23 | 126 | MYB TRANSFORMING PROTEIN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.4G221900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HF679439 | 1e-121 | HF679439.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB33 protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004965934.1 | 0.0 | transcription factor GAMYB | ||||
TrEMBL | A0A368QX24 | 0.0 | A0A368QX24_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Da00534.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12902 | 23 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06100.1 | 2e-57 | myb domain protein 33 |
Link Out ? help Back to Top | |
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Phytozome | Seita.4G221900.1.p |