PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.4G219100.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family M-type_MADS
Protein Properties Length: 156aa    MW: 17109.3 Da    PI: 4.8466
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.4G219100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF22.41.6e-07444949
                        HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
              SRF-TF  9 rqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                         q++fs R n+++  A+ LS   +a +av+ fs+tg+ + y
  Seita.4G219100.1.p  4 SQTSFSERTNTLFFMAKDLSQEFGAHIAVVAFSPTGEPKAY 44
                        69**********************************97766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500669.517148IPR002100Transcription factor, MADS-box
PfamPF003191.2E-8544IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.49E-10573IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MAQSQTSFSE RTNTLFFMAK DLSQEFGAHI AVVAFSPTGE PKAYGTPTTD SILRTYLPEI  60
LSSLSLACSE TAGEVATRVD GMKWEAEEII FLAKVKRAYL GSSDERRKTE FVGGGCGSSR  120
TDELPVFLRA LEVLRTDIQC HLDATESFQK EKMQP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.4G219100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963936.15e-51uncharacterized protein LOC101772943
TrEMBLA0A368QWT11e-110A0A368QWT1_SETIT; Uncharacterized protein
STRINGSi008260m9e-60(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7989512
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.18e-09AGAMOUS-like 29