PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.4G216400.2.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 328aa    MW: 33878.3 Da    PI: 9.8102
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.4G216400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.26.8e-09183230455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++iN ++e L+el+P +    sk    a +L + +++++sLq
  Seita.4G216400.2.p 183 SHSLAERARREKINARMELLKELVPGC----SKVSGTALVLDEIINHVQSLQ 230
                         8*************************9....333557888888888888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-13177235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.16E-9177234No hitNo description
Gene3DG3DSA:4.10.280.108.9E-13179234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.627179229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-6183230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.2E-9185235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MRHRLPLPPE LPAAGGEIQA ALIPAAAPAT GPAVSASSAA GRGGGGGSFT ALLGLPTSQA  60
MELLLPRAAA APPAPAPAPA PAPTFPSDPH LVDRAARFSA FASPSPSSPS PTPPPPPPPA  120
PPAAAAAANA GKRKADQPAD RASKGKSAKK GKTAEEKPAG GDGEDEKPAY VHVRARRGQA  180
TDSHSLAERA RREKINARME LLKELVPGCS KVSGTALVLD EIINHVQSLQ RQVECGRIAG  240
LNCKNGIDLE QVTWPEMGVH GARHLMQLQQ QFWHGDLAHP HQAPSQWEKR GDGHPPVFSS  300
SSPSLFGYDL TSSGAQQPPA SKLKTEL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.4G216400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0407291e-147BT040729.1 Zea mays full-length cDNA clone ZM_BFc0120O20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012701081.31e-155transcription factor bHLH48
TrEMBLA0A368QWP70.0A0A368QWP7_SETIT; Uncharacterized protein
STRINGGRMZM2G378653_P021e-156(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.29e-38bHLH family protein