PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.4G216400.1.p
Common NameSETIT_006781mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 353aa    MW: 36633.4 Da    PI: 9.5024
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.4G216400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.65.3e-09183230455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++iN ++e L+el+P +s    k    a +L + +++++sLq
  Seita.4G216400.1.p 183 SHSLAERARREKINARMELLKELVPGCS----KVSGTALVLDEIINHVQSLQ 230
                         8*************************94....22445556666666666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.68E-9177234No hitNo description
SuperFamilySSF474593.14E-15177248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-14179247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.627179229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-6183230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-8185235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MRHRLPLPPE LPAAGGEIQA ALIPAAAPAT GPAVSASSAA GRGGGGGSFT ALLGLPTSQA  60
MELLLPRAAA APPAPAPAPA PAPTFPSDPH LVDRAARFSA FASPSPSSPS PTPPPPPPPA  120
PPAAAAAANA GKRKADQPAD RASKGKSAKK GKTAEEKPAG GDGEDEKPAY VHVRARRGQA  180
TDSHSLAERA RREKINARME LLKELVPGCS KVSGTALVLD EIINHVQSLQ RQVEYLSMRL  240
AAVNPRVDFG GLDSFLTTEC GRIAGLNCKN GIDLEQVTWP EMGVHGARHL MQLQQQFWHG  300
DLAHPHQAPS QWEKRGDGHP PVFSSSSPSL FGYDLTSSGA QQPPASKLKT EL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.4G216400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0407290.0BT040729.1 Zea mays full-length cDNA clone ZM_BFc0120O20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012701081.30.0transcription factor bHLH48
SwissprotQ8VZ022e-63BH048_ARATH; Transcription factor bHLH48
TrEMBLK3XXX30.0K3XXX3_SETIT; Uncharacterized protein
STRINGSi006781m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69322735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.23e-50bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]