PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.4G214200.1.p

Common Name

LOC101782151, SETIT_007022mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

MYB_related

Protein Properties

Length: 293aa MW: 32527.6 Da PI: 9.1237

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.4G214200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	37.2	6.9e-12	126	171	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g WT E+ l++++ + +G g+Wk I++++ ++Rt+ q+ s+ qky Seita.4G214200.1.p 126 GFWTMPEHRLFLRGLQVYGRGNWKNISKYFVTTRTPVQVSSHAQKY 171 67*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.881	120	176	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.0E-10	121	174	IPR009057	Homeodomain-like
SMART	SM00717	6.0E-9	124	174	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	7.48E-15	125	175	IPR009057	Homeodomain-like
Pfam	PF00249	2.8E-9	128	171	IPR001005	SANT/Myb domain
CDD	cd00167	3.52E-8	128	172	No hit	No description
TIGRFAMs	TIGR01557	4.6E-13	128	174	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MDPTKTNGEW SASEIKMVKS LIARYKANKN YTADMNKKHS DIINEVHAMF PLKERLQVIS 60 LYADLIVEMM QSTTDNSSYY FVAASRDLVN NNFEIPVEDP AIDNMRVSQA VPLRQSAPRM 120 QRLRTGFWTM PEHRLFLRGL QVYGRGNWKN ISKYFVTTRT PVQVSSHAQK YFRRIGNNAH 180 KQRYSINDIG LYDAEPWAQN NNSDWEGFIT SGAYNSNHIG AGGQHATMNN LAQVQPPILY 240 HASQASSSSQ VATLAIDKKI GAASSSVALV IEGAGSSQAA CLGDQLGDFL SD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.4G214200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004967177.1	0.0	myb-like protein H
TrEMBL	K3XYL4	0.0	K3XYL4_SETIT; Uncharacterized protein
STRING	Si007022m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP842	30	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38090.1	6e-22	MYB family protein

Link Out ? help Back to Top
Phytozome	Seita.4G214200.1.p
Entrez Gene	101782151