PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.4G206800.1.p | ||||||||
Common Name | SETIT_007882mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ERF | ||||||||
Protein Properties | Length: 247aa MW: 26154.5 Da PI: 10.7553 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 32.6 | 2e-10 | 34 | 82 | 1 | 54 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkle 54 ++y+GV + + r++A I+ + +k ++lg++gta eAa a++aa+++ Seita.4G206800.1.p 34 TRYRGVQMRGR--RYAATIWNpF----LKKAIRLGSYGTAVEAAYAYDAAARSVL 82 68****98775..9*******44....25**********************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.1E-5 | 34 | 81 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 11.996 | 35 | 91 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.8E-14 | 35 | 92 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.55E-12 | 35 | 91 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.4E-10 | 35 | 97 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MPGPGRVVEL ARQAAAAARA DGRAAREAAV QPATRYRGVQ MRGRRYAATI WNPFLKKAIR 60 LGSYGTAVEA AYAYDAAARS VLGRWARPNF PELSAAPAAR EVIAADLARA RRAAEPARQQ 120 QQAPRRQAPL IRCWVPAPAG AAAQHQERVA PPVFAFRREA APQYMRLHYR PGSAATGGGL 180 YAVAFVPGVP DLNDPVPDTS SSELSSTESG SAPAAPNRRE LPHLPALAVE PDQSMVGDNF 240 TDSSAA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.4G206800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004967157.1 | 1e-144 | dehydration-responsive element-binding protein 2D | ||||
TrEMBL | A0A368QWJ5 | 1e-170 | A0A368QWJ5_SETIT; Uncharacterized protein | ||||
STRING | Si007882m | 1e-162 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP17311 | 6 | 10 |
Link Out ? help Back to Top | |
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Phytozome | Seita.4G206800.1.p |