PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.4G206700.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 192aa    MW: 20145.1 Da    PI: 4.2287
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.4G206700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.37.9e-133580151
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51
                        s y+GVr+ +  g++ AeIrdp +   + r +lg++ taeeAa a++ a++
  Seita.4G206700.1.p 35 SFYRGVRR-H-YGKYGAEIRDPLD---SERAWLGTYATAEEAAYAYDIAAR 80
                        67****95.4.7*********955...5*********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.5E-163594IPR016177DNA-binding domain
SMARTSM003801.1E-183698IPR001471AP2/ERF domain
PROSITE profilePS5103216.8713692IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-223792IPR001471AP2/ERF domain
PfamPF008475.3E-53779IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MDGVSGDFFQ LVREAAAAAK AEREEAGHPP LPVQSFYRGV RRHYGKYGAE IRDPLDSERA  60
WLGTYATAEE AAYAYDIAAR VVQGNKARPN FNISPLMPGD DDDAATEIVL AYFAELRHAR  120
MARAERRAQQ AAAEAAAAPA PDAAPAQIPS APADPDDDVD LQQEPGAAAP EGDLPPGPSF  180
ADASNIGAGS E*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.4G206700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967156.11e-132ethylene-responsive transcription factor ERF003-like
TrEMBLA0A368QWI01e-130A0A368QWI0_SETIT; Uncharacterized protein
STRINGPavir.Db00700.1.p2e-36(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2289355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12980.13e-10ERF family protein