PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.4G205800.1.p
Common NameLOC101773924, SETIT_006938mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB
Protein Properties Length: 316aa    MW: 33447.5 Da    PI: 8.0146
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.4G205800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.53.5e-191156147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        rg+W++eEd+ l ++v+++G ++W++I r+++ gR++k+c++rw + 
  Seita.4G205800.1.p 11 RGPWSPEEDDALRRLVERHGARNWTAIGREIP-GRSGKSCRLRWCNQ 56
                        89******************************.***********985 PP
2Myb_DNA-binding55.11.8e-1763105145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         r ++T+eEd  +v+a+++lG++ W++Iar ++ gRt++ +k++w+
  Seita.4G205800.1.p  63 RRPFTAEEDAAIVRAHARLGNR-WAAIARLLP-GRTDNAVKNHWN 105
                         679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.62661IPR017930Myb domain
SuperFamilySSF466893.71E-318104IPR009057Homeodomain-like
SMARTSM007175.3E-171059IPR001005SANT/Myb domain
PfamPF002491.5E-181156IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-251264IPR009057Homeodomain-like
CDDcd001672.97E-161355No hitNo description
SMARTSM007175.3E-1662110IPR001005SANT/Myb domain
PROSITE profilePS5129420.28663112IPR017930Myb domain
PfamPF002498.9E-1563105IPR001005SANT/Myb domain
CDDcd001671.29E-1265105No hitNo description
Gene3DG3DSA:1.10.10.604.2E-2365112IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MGAEAECDRI RGPWSPEEDD ALRRLVERHG ARNWTAIGRE IPGRSGKSCR LRWCNQLSPQ  60
VERRPFTAEE DAAIVRAHAR LGNRWAAIAR LLPGRTDNAV KNHWNCSLKR KLAAATAASG  120
AVAGAGADEF EARPCKRVSL SPDSPSSGTG TVSDRSDLSH GAGAGSGSGS GQIYRPVPRS  180
GGFEPADCAM SRPVEDDDPL TSLSLSLPGT DQRFHHDRAH SQFQELPPPP SPPSPSPPPP  240
PAPVAAAATS PYPFNPDFMA VMQELIRTEV QRYMASVGVR AGCGPAGGAE LCMPQLVEGV  300
MRAAAERVGA VGRIQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-3981124108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00476DAPTransfer from AT4G37260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.4G205800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794291e-153HF679429.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB23 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965791.10.0transcription factor MYB44
TrEMBLK3XYD00.0K3XYD0_SETIT; Uncharacterized protein
STRINGSi006938m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78938154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.19e-59myb domain protein r1