PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.4G190700.1.p
Common NameLOC101758920, SETIT_006559mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family SBP
Protein Properties Length: 411aa    MW: 43591.1 Da    PI: 9.2944
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.4G190700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.23.5e-41179255177
                         --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                 SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                         +Cq+egC+adls ak+yhrrhkvCe h+ka+vv++ g++qrfCqqCsrfh l+efDe+krsCr+rLa+hn+rrrk++
  Seita.4G190700.1.p 179 RCQAEGCKADLSGAKHYHRRHKVCEYHAKASVVAAGGKQQRFCQQCSRFHVLTEFDEAKRSCRKRLAEHNRRRRKPA 255
                         6**************************************************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.6E-35172241IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.496177254IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.22E-38178257IPR004333Transcription factor, SBP-box
PfamPF031103.6E-31180253IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009556Biological Processmicrosporogenesis
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MMSGGRLNVT TSSPGDDFPF APVQQQQQQP PPPYVGFEHG VTGGSGGVMQ RHLYDGLDFA  60
TALQFQEAAA PHHQLLTLPS SLAPMAPPMQ MPMPMPLQMP MPMPGMPGDV YPALGMVKRE  120
GGGVGADGAT AAGRIGLNLG RRTYFSPGDM LAVDRLLMRS RLGGVFGFGF GGAHHQPPRC  180
QAEGCKADLS GAKHYHRRHK VCEYHAKASV VAAGGKQQRF CQQCSRFHVL TEFDEAKRSC  240
RKRLAEHNRR RRKPATTASS KDAASPPAKK PSGGSISGSY TTDSKNLSTT KSTMSSNTGS  300
VISCLDQGNK QLARPTLTLG ASPDKQDHHH QLSTMLQVQA AAGGHHQEQH FITSLQVHNN  360
GGNGGGNNIL SCSSVCSSAL PSAAANGEVS DQNTNNGNGN MHNLFEVDFM *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-291802531184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1236253KRSCRKRLAEHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00090SELEXTransfer from AT1G02065Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.4G190700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ0116170.0AJ011617.1 Zea mays mRNA for SBP-domain protein 4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965676.10.0squamosa promoter-binding-like protein 10
SwissprotA2YFT91e-113SPL10_ORYSI; Squamosa promoter-binding-like protein 10
SwissprotQ0DAE81e-113SPL10_ORYSJ; Squamosa promoter-binding-like protein 10
TrEMBLK3XXA10.0K3XXA1_SETIT; Uncharacterized protein
STRINGSi006559m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23753593
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.11e-47squamosa promoter binding protein-like 8