PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.4G184600.1.p
Common NameSETIT_008260mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family M-type_MADS
Protein Properties Length: 170aa    MW: 18547.9 Da    PI: 5.2992
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.4G184600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF21.82.4e-07546445
                        -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
              SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                         ++ + q++fs R n+++  A+ LS   +a v v+ fs+t +
  Seita.4G184600.1.p  5 TSTAQSQTSFSERTNTLFSMAKDLSQEFGAHVTVVAFSPTSE 46
                        677889*********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500669.068154IPR002100Transcription factor, MADS-box
PfamPF003191.6E-8650IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-8764IPR002100Transcription factor, MADS-box
Gene3DG3DSA:3.40.50.6209.2E-413106IPR014729Rossmann-like alpha/beta/alpha sandwich fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MPKSTSTAQS QTSFSERTNT LFSMAKDLSQ EFGAHVTVVA FSPTSEPKAY GAPTADSFLC  60
TYLPEIHSSS SPACSKTAGE AAAMVDRMKQ KVEETAFLVE VERARQAVAW SKILAAQMSA  120
GKQNWWEVDV EALGADELPV FVRALEVLRT DVQRHLDAME SSRKEKMQP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.4G184600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967110.11e-104uncharacterized protein LOC101775407
TrEMBLK3Y2411e-121K3Y241_SETIT; Uncharacterized protein
STRINGSi008260m1e-122(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7989512
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.12e-09AGAMOUS-like 29