PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.4G184600.1.p | ||||||||
Common Name | SETIT_008260mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 170aa MW: 18547.9 Da PI: 5.2992 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 21.8 | 2.4e-07 | 5 | 46 | 4 | 45 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 ++ + q++fs R n+++ A+ LS +a v v+ fs+t + Seita.4G184600.1.p 5 TSTAQSQTSFSERTNTLFSMAKDLSQEFGAHVTVVAFSPTSE 46 677889*********************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 9.068 | 1 | 54 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.6E-8 | 6 | 50 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.96E-8 | 7 | 64 | IPR002100 | Transcription factor, MADS-box |
Gene3D | G3DSA:3.40.50.620 | 9.2E-4 | 13 | 106 | IPR014729 | Rossmann-like alpha/beta/alpha sandwich fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MPKSTSTAQS QTSFSERTNT LFSMAKDLSQ EFGAHVTVVA FSPTSEPKAY GAPTADSFLC 60 TYLPEIHSSS SPACSKTAGE AAAMVDRMKQ KVEETAFLVE VERARQAVAW SKILAAQMSA 120 GKQNWWEVDV EALGADELPV FVRALEVLRT DVQRHLDAME SSRKEKMQP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.4G184600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004967110.1 | 1e-104 | uncharacterized protein LOC101775407 | ||||
TrEMBL | K3Y241 | 1e-121 | K3Y241_SETIT; Uncharacterized protein | ||||
STRING | Si008260m | 1e-122 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7989 | 5 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 2e-09 | AGAMOUS-like 29 |
Link Out ? help Back to Top | |
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Phytozome | Seita.4G184600.1.p |