PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.4G180500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | HSF | ||||||||
Protein Properties | Length: 270aa MW: 28297.7 Da PI: 6.804 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 104.8 | 7.3e-33 | 11 | 103 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 F+ k+y ++ed+ ++ +i w + +nsf+v d+ f++++Lp +Fkh+nf+SFvRQLn+YgF+kv+ ++ weF+h sF +g+++ Seita.4G180500.1.p 11 FVWKTYMMVEDPGTDGVIGWGRGNNSFIVADPFVFSQTLLPAHFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFAHASFLRGQTH 92 9****************************************************************999.........************** PP XXXXXXXXXXX CS HSF_DNA-bind 93 llekikrkkse 103 ll++i r+ s+ Seita.4G180500.1.p 93 LLRNIVRRGSS 103 *******9765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 2.7E-50 | 7 | 100 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 4.08E-33 | 8 | 100 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 6.8E-37 | 8 | 100 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 3.4E-28 | 11 | 100 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.3E-17 | 11 | 34 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.3E-17 | 49 | 61 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 50 | 74 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.3E-17 | 62 | 74 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MTAGGGAAAP FVWKTYMMVE DPGTDGVIGW GRGNNSFIVA DPFVFSQTLL PAHFKHNNFS 60 SFVRQLNTYG FRKVDPDRWE FAHASFLRGQ THLLRNIVRR GSSAAGGGGG GKRKDAAALA 120 GSAELSAEDM AMVATEVVRL KQEQRAIDDR VASMWRRVQE TELRPKQMLA FLLKVVGDRD 180 RLHRLVGDGH APDGELAPGG GEPAAAEGGE KRARLLLDGD GVGSFGPDAI DFAGFYSSGG 240 AFGGNVAVDA AAGSGGGGCS FAFGVDTGY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 2e-25 | 3 | 105 | 12 | 125 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.4G180500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU959741 | 0.0 | EU959741.1 Zea mays clone 219739 heat shock factor protein 3 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004965592.1 | 0.0 | heat stress transcription factor C-2b | ||||
Swissprot | Q0DBL6 | 1e-123 | HFC2B_ORYSJ; Heat stress transcription factor C-2b | ||||
TrEMBL | A0A368QVH6 | 0.0 | A0A368QVH6_SETIT; Uncharacterized protein | ||||
STRING | GRMZM2G118047_P01 | 1e-137 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4471 | 34 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24520.1 | 1e-57 | heat shock transcription factor C1 |
Link Out ? help Back to Top | |
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Phytozome | Seita.4G180500.1.p |