PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.4G157600.1.p | ||||||||
Common Name | SETIT_008184mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB_related | ||||||||
Protein Properties | Length: 235aa MW: 26505.7 Da PI: 8.6648 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.6 | 3.2e-09 | 138 | 198 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT...........-HHHHHHHHT......TTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg...........tWktIartmg......kgRtlkqcksrwqky 47 W +e+d++lv + + ++ Wk Ia + + k+Rt+ qck++w+k Seita.4G157600.1.p 138 WNQEDDLRLVSCWLKNSNDpisgngkkschFWKDIADEYNkhapegKNRTAMQCKEHWNKT 198 ***********************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.0E-6 | 134 | 204 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.097 | 138 | 199 | IPR017877 | Myb-like domain |
Pfam | PF00249 | 6.4E-6 | 138 | 197 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MGHRAGHPPA RLEERERRRE AERCLRLFST MNFRPHHYPQ NYLSPHVHPN FHDHYPQNVN 60 PFLGPSYQSL SPTPASYHGG PFSRNIRQYL PGGVGGFVAN GPASPVGSMA FLLSSGGSKE 120 WSYASEDEAK KKGGRIIWNQ EDDLRLVSCW LKNSNDPISG NGKKSCHFWK DIADEYNKHA 180 PEGKNRTAMQ CKEHWNKTIP HINKFHGVYH DICSTIVGLL FDCQWHDCAG LSSN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.4G157600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | K3Y1W5 | 1e-176 | K3Y1W5_SETIT; Uncharacterized protein | ||||
STRING | Si008184m | 1e-177 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP449 | 6 | 10 |
Link Out ? help Back to Top | |
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Phytozome | Seita.4G157600.1.p |