PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.4G125300.1.p | ||||||||
Common Name | SETIT_007865mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | NF-YB | ||||||||
Protein Properties | Length: 190aa MW: 20200.8 Da PI: 6.1194 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 112.5 | 2.4e-35 | 18 | 109 | 5 | 96 |
NF-YB 5 drflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 ++ +P a v+rim+k+ P n+ki+ dake v++c ++f +fvt+ a++ c+r+kr t++gddl+ a+ +lGf++yv pl++yl++yre+eg Seita.4G125300.1.p 18 EHKIPRATVARIMRKATPPNSKIGADAKEAVDQCLVKFAAFVTQVAAEECRRDKRTTVTGDDLILAFKNLGFDNYVGPLTLYLRRYREIEG 108 6789**************************************************************************************9 PP NF-YB 96 e 96 + Seita.4G125300.1.p 109 N 109 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 3.2E-31 | 11 | 119 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 5.41E-26 | 18 | 110 | IPR009072 | Histone-fold |
Pfam | PF00808 | 7.3E-17 | 20 | 83 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 1.1E-6 | 48 | 66 | No hit | No description |
PRINTS | PR00615 | 1.1E-6 | 67 | 85 | No hit | No description |
PRINTS | PR00615 | 1.1E-6 | 86 | 104 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MDNQPKNHQD GATEAPEEHK IPRATVARIM RKATPPNSKI GADAKEAVDQ CLVKFAAFVT 60 QVAAEECRRD KRTTVTGDDL ILAFKNLGFD NYVGPLTLYL RRYREIEGNM PRARHSTMRS 120 QGAPPAPVAL TVEAAAAPSS GLTLQLGPPS VPDVTELGLH ADVYAVWRGA GPAPAAGTSQ 180 APSCADEEE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1n1j_A | 7e-27 | 21 | 105 | 9 | 93 | NF-YB |
4awl_B | 6e-27 | 21 | 105 | 10 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
4csr_A | 6e-27 | 21 | 105 | 10 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.4G125300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004966907.1 | 1e-119 | nuclear transcription factor Y subunit B-1 | ||||
TrEMBL | K3Y103 | 1e-137 | K3Y103_SETIT; Uncharacterized protein | ||||
STRING | Si007865m | 1e-137 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14056 | 13 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14540.1 | 4e-35 | nuclear factor Y, subunit B3 |
Link Out ? help Back to Top | |
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Phytozome | Seita.4G125300.1.p |