PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.4G125200.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NF-YB
Protein Properties Length: 116aa    MW: 12589.4 Da    PI: 5.1593
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.4G125200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB69.18.1e-2215881184
               NF-YB 11 anvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplk 84
                        a ++r+ + ++Pan+ki+ dake ++ cv+ef   +   a ++c++++r ti+gddl+ a+ +lGf++yv pl+
  Seita.4G125200.1.p 15 ATLARMRQPAMPANSKIAGDAKEAMDLCVAEFTMDLMRAAWQQCRQDQRLTITGDDLILAMRSLGFDNYVGPLT 88
                        678999999***************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.47E-181497IPR009072Histone-fold
Gene3DG3DSA:1.10.20.102.1E-191488IPR009072Histone-fold
PfamPF008083.5E-111575IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
MDNIEGKEAP EARKATLARM RQPAMPANSK IAGDAKEAMD LCVAEFTMDL MRAAWQQCRQ  60
DQRLTITGDD LILAMRSLGF DNYVGPLTRA PPPLPRPAQR DATTINCPAS DGKSD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A1e-1815871284NF-YB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.4G125200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966907.18e-25nuclear transcription factor Y subunit B-1
TrEMBLA0A368QTX22e-78A0A368QTX2_SETIT; Uncharacterized protein
STRINGSi007865m6e-25(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5887022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.12e-18nuclear factor Y, subunit B3