PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.4G122900.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bZIP
Protein Properties Length: 182aa    MW: 20216.3 Da    PI: 7.7418
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.4G122900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_138.62.4e-1289147462
                         XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                          +r rr ++NRe+ArrsR RK+ ++ +L   ++ L + N++L ++l++    ++++  +
  Seita.4G122900.1.p  89 ERRRRRTASNRESARRSRVRKQRQLSQLWAQAAHLRGDNRDLLDRLNRAIRDCDRVLHD 147
                         5899******************************************9988888876655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1705.1E-785141No hitNo description
SMARTSM003387.7E-986150IPR004827Basic-leucine zipper domain
PfamPF001701.1E-988143IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.7688151IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.21E-990138No hitNo description
PROSITE patternPS00036093108IPR004827Basic-leucine zipper domain
CDDcd147021.07E-1297142No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MYPGEVASVV LPYQPPATTV ALGFGTHYHP PADDLFPWSS NDLLITLPYS ATAAHCQQHP  60
AGQQPFLDHH VLGGPDEAGG GERQQLAEER RRRRTASNRE SARRSRVRKQ RQLSQLWAQA  120
AHLRGDNRDL LDRLNRAIRD CDRVLHDNAR LSDQRDGLQR RLQELGGGDD DDGSSRMPAA  180
T*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18994RRRRRT
2102108RRSRVRK
3102109RRSRVRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.4G122900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7282631e-65KJ728263.1 Zea mays clone pUT6540 bZIP transcription factor (bZIP59) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965226.11e-129basic leucine zipper 8
TrEMBLA0A368QTE81e-128A0A368QTE8_SETIT; Uncharacterized protein
STRINGSi007892m1e-118(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118635126