PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.4G116600.1.p
Common NameLOC101786451, SETIT_006432mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family CO-like
Protein Properties Length: 446aa    MW: 47590 Da    PI: 4.8639
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.4G116600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box26.51.4e-082164340
            zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                        +r C+ + + +++++C  ++ +lC+ C ++ H+       H++v
  Seita.4G116600.1.p 21 ARACDGCLRRRARWYCAADDAFLCQACDTSVHSAnplarrHERV 64
                        578*****************************667888888876 PP
2CCT66.57.5e-23390433144
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                         Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk+a
  Seita.4G116600.1.p 390 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRA 433
                         9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.8E-121966IPR000315B-box-type zinc finger
PROSITE profilePS5011910.7651966IPR000315B-box-type zinc finger
PfamPF006432.5E-72264IPR000315B-box-type zinc finger
CDDcd000211.91E-102466No hitNo description
PfamPF062031.3E-17390432IPR010402CCT domain
PROSITE profilePS5101715.993390432IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MIATGSSAKA AAAGAVGGKA ARACDGCLRR RARWYCAADD AFLCQACDTS VHSANPLARR  60
HERVRLQPTS PLRAPPPAWA AQCEPRDDVV PAWFRRKART PRGGHAKSVA QVLSRRLVVP  120
EAAGGDGDSP EGRNGEGEVE EEQLLYRVPI FDPALAEFCS PPPLEDAAAV ASSCNEDGTV  180
EDPANPHPAA PAPPPVQFFP DGHASFEPTD AELREFAADM EALLGRGLDD GNEDSSFYME  240
TLGLLDPVDD DAGVARVKLE IDGGGAFDAS GTPACGVQLE AEASDEMLDI DFDYGSPQET  300
PDDKAASSDT SAAATDAQFL QTSLSLTLNY EAIIQSWGSS PWTGSGERPH VKLDGSWPHD  360
YTSMWVVGGM VGHVGEELGT PRLGMMDGGR EARVSRYREK RRTRLFAKKI RYEVRKLNAE  420
KRPRMKGRFV KRATAGGSVA VAGLA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1400416RRTRLFAKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.4G116600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965182.10.0zinc finger protein CONSTANS-LIKE 16
TrEMBLK3XWX40.0K3XWX4_SETIT; Uncharacterized protein
STRINGSi006432m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32833058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.14e-74B-box type zinc finger protein with CCT domain