PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.4G115200.1.p
Common NameLOC101782953, SETIT_007017mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB
Protein Properties Length: 294aa    MW: 31752.6 Da    PI: 4.8055
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.4G115200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.31e-141461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd++lv     +G  +W+ +++  g+ R++k+c++rw +yl
  Seita.4G115200.1.p 14 KGPWTAEEDQKLVGFLLTHGHCCWRIVPKLAGLLRCGKSCRLRWTNYL 61
                        79******************************99************97 PP
2Myb_DNA-binding51.52.3e-1667111147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg  + +E+ l +d++ qlG++ W++Ia++++ gRt++++k++w+++
  Seita.4G115200.1.p  67 RGVLSDDEERLVIDLHGQLGNR-WSKIAARLP-GRTDNEIKNHWNTH 111
                         677799****************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-20562IPR009057Homeodomain-like
PROSITE profilePS5129413.561961IPR017930Myb domain
SuperFamilySSF466899.73E-2711108IPR009057Homeodomain-like
SMARTSM007175.1E-111363IPR001005SANT/Myb domain
PfamPF002493.3E-131461IPR001005SANT/Myb domain
CDDcd001671.19E-81661No hitNo description
PROSITE profilePS5129426.73962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-2363116IPR009057Homeodomain-like
SMARTSM007177.9E-1566114IPR001005SANT/Myb domain
PfamPF002495.1E-1467111IPR001005SANT/Myb domain
CDDcd001671.17E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MGRQPCCDKV GVKKGPWTAE EDQKLVGFLL THGHCCWRIV PKLAGLLRCG KSCRLRWTNY  60
LRPDLKRGVL SDDEERLVID LHGQLGNRWS KIAARLPGRT DNEIKNHWNT HIRKKLLRMG  120
IDPVTHLPLQ EAPAPPPQEQ QEDQPPPAPP QQQQQQPPQP QEHHQPRNDS GLMLQDDDAG  180
EEDLPMFQPH EVATAPPAPP TAAAAAVSNC GSVSSASAGS VSVVSPSCSS SASAPAASGV  240
EATEWPEPMY LFGMDDGIID AGSWDGLFPG GGMGVDPFDG YPGGGFDQDD DWL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-29141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtR2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.4G115200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0375371e-174BT037537.1 Zea mays full-length cDNA clone ZM_BFb0176M23 mRNA, complete cds.
GenBankEU9518731e-174EU951873.1 Zea mays clone 1061835 odorant 1 protein mRNA, complete cds.
GenBankJX4699451e-174JX469945.1 Zea mays subsp. mays clone UT3206 MYB-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965175.10.0protein ODORANT1
SwissprotQ50EX64e-84ODO1_PETHY; Protein ODORANT1
TrEMBLK3XYK90.0K3XYK9_SETIT; Uncharacterized protein
STRINGSi007017m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22680.14e-77myb domain protein 85
Publications ? help Back to Top
  1. Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC
    ODORANT1 regulates fragrance biosynthesis in petunia flowers.
    Plant Cell, 2005. 17(5): p. 1612-24
    [PMID:15805488]