PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.4G110900.1.p | ||||||||
Common Name | LOC101752998, SETIT_005790mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | NF-X1 | ||||||||
Protein Properties | Length: 964aa MW: 103972 Da PI: 7.9714 | ||||||||
Description | NF-X1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-NF-X1 | 16.1 | 2.5e-05 | 236 | 253 | 1 | 18 |
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG+H C+ CH+GpC++C Seita.4G110900.1.p 236 CGNHVCKDMCHPGPCGEC 253 ****************** PP | |||||||
2 | zf-NF-X1 | 19.1 | 2.8e-06 | 294 | 311 | 1 | 18 |
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG H+C+ CHeG+CppC Seita.4G110900.1.p 294 CGVHRCKVNCHEGECPPC 311 ****************** PP | |||||||
3 | zf-NF-X1 | 18.1 | 5.8e-06 | 389 | 407 | 1 | 19 |
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG+H Cq lCH G CppC Seita.4G110900.1.p 389 CGQHACQLLCHSGHCPPCL 407 ******************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00438 | 0.023 | 117 | 135 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 7.1 | 119 | 134 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 3.34E-11 | 162 | 210 | No hit | No description |
SMART | SM00438 | 0.0021 | 172 | 191 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.056 | 172 | 189 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 2.91E-9 | 226 | 269 | No hit | No description |
SMART | SM00438 | 3.5E-4 | 236 | 255 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.0025 | 236 | 253 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.28E-12 | 284 | 332 | No hit | No description |
SMART | SM00438 | 4.2E-4 | 294 | 313 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 4.3E-5 | 294 | 311 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 7.53E-8 | 379 | 431 | No hit | No description |
SMART | SM00438 | 2.2E-4 | 389 | 408 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 1.3E-4 | 389 | 406 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.34 | 446 | 464 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 54 | 446 | 462 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.21 | 499 | 534 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.0086 | 499 | 514 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 8.7 | 536 | 562 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.32 | 543 | 564 | IPR000967 | Zinc finger, NF-X1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009642 | Biological Process | response to light intensity | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009697 | Biological Process | salicylic acid biosynthetic process | ||||
GO:0010188 | Biological Process | response to microbial phytotoxin | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 964 aa Download sequence Send to blast |
MICYDMVRRS APIWSCDSCF SIFHLPCIRK WVRSPASAAD ASPAADPASP SWRCPGCQSV 60 YDTPARDLAY TCFCRRRREP PNDHFLTPHS CGEPCSKPLE RAEPPGAKGE DADATRCPHV 120 CVLQCHPGPC PPCKAFAPDR PCPCGKQIIV RRCADRSTPV TCGRPCERML PCRRHRCEKV 180 CHTGPCGDCA VVISARCFCG KKNEALLCGD MVVKGKLSEE DGVFSCSEPC GRMLACGNHV 240 CKDMCHPGPC GECELMPGKV TTCHCGKTRL QESRASCLDP IPTCDKICDK NLPCGVHRCK 300 VNCHEGECPP CLVRVEQKCR CGSSGRMVEC YQVKKEEFRC NKPCGRKKNC GRHRCSECCC 360 PLSRKFAQLE GGDWDPHLCQ ISCGKKLRCG QHACQLLCHS GHCPPCLETI FTDLTCACGR 420 TSIPPPLPCG TPTPSCPHQC SVPQPCGHPA SHSCHFGDCP PCVVPVMREC IGGHVMLRNI 480 PCGSKDIRCN QPCGKNRQCG IHACNRACHP APCDQPPANG DASSSSGGKA SCGQVCGAAR 540 RECKHTCTAP CHPSSQCPDL RCEFPVTITC SCGRITATVP CGAGGASSSD NMFEVSIIQK 600 LPMPLQPVES NGRRVPLGQR KLSCDDECAK MEKKRVLAEA FDITPPNLDA LHFGENSSAS 660 DLVSDLFRRD PKWVVAIEER CKFLVLGKVR GSSSGNLKLH VFCPMLKDKR DAIRLIADRW 720 KLSVQSAGWE PKRFITIHVT PKSKPPARIL GSKAGAPVTA AHPYFDPLVD MDPRLVVAML 780 DLPRDADVNA LVLRFGGECE LVWLNDKNAI AVFNDPARAA TALRRLDYGS AYQGAAMFMP 840 SSAQASSSGN VWVGGQKDGG LAARSNPWKK PGAAEPDLSS GDWTGVAGHA PAPGWRGANT 900 AAQVMGTQNR WNVLESDAAT SSGPGEDRKT APRTDVQNSG NAGPSVSKLQ PDVEVDDWEE 960 ACE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Mediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.4G110900.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004966863.2 | 0.0 | NF-X1-type zinc finger protein NFXL1 | ||||
Swissprot | Q9SY59 | 0.0 | NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1 | ||||
TrEMBL | K3XV33 | 0.0 | K3XV33_SETIT; Uncharacterized protein | ||||
STRING | Si005790m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6130 | 35 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10170.1 | 0.0 | NF-X-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Seita.4G110900.1.p |
Entrez Gene | 101752998 |