PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.4G097900.1.p | ||||||||
Common Name | LOC101758915, SETIT_006631mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | TCP | ||||||||
Protein Properties | Length: 390aa MW: 39507.6 Da PI: 8.2742 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 136.9 | 1.7e-42 | 58 | 234 | 2 | 137 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg... 88 ++k+++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s++ Seita.4G097900.1.p 58 PPKRTSTKDRHTKVDGRGRRIRMPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSFSIPahl 148 789******************************************************************9998889999999977777999 PP TCP 89 ..................................kaaksaakskksqksaasalnlakesr.akarar.are.rtrekmriknkln 137 + ++++ + s +s + l+++ +s+ a a+++ +r+ r++++m+++++++ Seita.4G097900.1.p 149 rapglpgtrfggargdpwdrvvglgfggaegppsATSSASSPLLLSFHSGSVGLDVSPSSSsAAASSDlSRKrRWEQEMQQQQQQQ 234 999999**************************963333333777777777777999885551444444788879999999998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.2E-44 | 62 | 234 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.675 | 64 | 118 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence Send to blast |
MDVSGDAGGG RRPNFPLQLL EKKEEQPCST SPAAGVGAGA GANGAAGPGE LQVRKLAPPK 60 RTSTKDRHTK VDGRGRRIRM PAICAARVFQ LTRELGHKTD GETIEWLLQQ AEPAVIAATG 120 TGTIPANFTS LNISLRSSGS SFSIPAHLRA PGLPGTRFGG ARGDPWDRVV GLGFGGAEGP 180 PSATSSASSP LLLSFHSGSV GLDVSPSSSS AAASSDLSRK RRWEQEMQQQ QQQQQYQQQM 240 AGYTQSQMPG TVWMVPSSNA QAAAAAAGGG GGGGESIWTF PQGASGGGAA TLYRGVPSGL 300 HLMNFPAPMA LLPGGQQLGL GQAGGNNDNG GGGGEGHMGI LAALNAYRVQ AASDAAAAAQ 360 NGAEGGSSQH HQQHGGGERQ ESMSPSDDS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved the regulation of plant development. Together with TCP15, modulates plant stature by promoting cell division in young internodes. Represses cell proliferation in leaf and floral tissues (PubMed:21668538). Together with TCP15, acts downstream of gibberellin (GA), and the stratification pathways that promote seed germination. Involved in the control of cell proliferation at the root apical meristem (RAM) by regulating the activity of CYCB1-1 (PubMed:25655823). Involved in the regulation of seed germination. May regulate the activation of embryonic growth potential during seed germination (PubMed:17953649, PubMed:22155632). Acts together with SPY to promote cytokinin responses that affect leaf shape and trichome development in flowers (PubMed:22267487). Transcription factor involved in the regulation of endoreduplication. Represses endoreduplication by activating the gene expression of the key cell-cycle regulators RBR1 and CYCA2-3 (PubMed:25757472). Regulates the expression of the defense gene pathogenesis-related protein 2 (PR2) in antagonism to SRFR1, a negative regulator of effector-triggered immunity (PubMed:24689742). Involved in positive regulation of plant defense. Represses jasmonate (JA) response to promote disease resistance. Regulates the plant immune system by transcriptionally repressing a subset of JA-responsive genes (PubMed:28132837). {ECO:0000269|PubMed:17953649, ECO:0000269|PubMed:21668538, ECO:0000269|PubMed:22155632, ECO:0000269|PubMed:22267487, ECO:0000269|PubMed:24689742, ECO:0000269|PubMed:25655823, ECO:0000269|PubMed:25757472, ECO:0000269|PubMed:28132837}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.4G097900.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced during seed imbibition (PubMed:17953649). Circadian-regulation with the lowest expression in the middle of the dark period (PubMed:17953649). {ECO:0000269|PubMed:17953649}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004965036.1 | 0.0 | transcription factor TCP15 | ||||
Swissprot | Q93Z00 | 5e-57 | TCP14_ARATH; Transcription factor TCP14 | ||||
TrEMBL | K3XXH3 | 0.0 | K3XXH3_SETIT; Uncharacterized protein | ||||
STRING | Si006631m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3744 | 34 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69690.1 | 2e-44 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.4G097900.1.p |
Entrez Gene | 101758915 |
Publications ? help Back to Top | |||
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