PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.4G093200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 397aa MW: 43215 Da PI: 4.7603 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.8 | 1.2e-27 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtfskRrng++KKA+ELSvLCd+++a+i+fs++++l +s Seita.4G093200.1.p 9 KRIENTTNRQVTFSKRRNGLIKKAYELSVLCDIDIALIMFSPSNRLCHFS 58 79********************************************9987 PP | |||||||
2 | K-box | 25.7 | 4.8e-10 | 111 | 179 | 9 | 77 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqi 77 +++ e+lq+e++k + +++ L++ +R + + L+ s++e + e+ L + l ++ ++K+ ll++++ Seita.4G093200.1.p 111 PVNSNIEELQNEIRKYQHQVQALEERIRMFEPDPLSLASMNEVEATEKFLMETLARVEERKKYLLCNHM 179 567899***********************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 8.3E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.268 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.92E-36 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 3.27E-29 | 2 | 81 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-25 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.6E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-25 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-25 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010152 | Biological Process | pollen maturation | ||||
GO:0080092 | Biological Process | regulation of pollen tube growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 397 aa Download sequence Send to blast |
MGRVKLQIKR IENTTNRQVT FSKRRNGLIK KAYELSVLCD IDIALIMFSP SNRLCHFSGR 60 RRIEDVITKY INLPEQDRGG IVRNREYLIK MLTQLKCEGD IAEQLTPNKG PVNSNIEELQ 120 NEIRKYQHQV QALEERIRMF EPDPLSLASM NEVEATEKFL METLARVEER KKYLLCNHMG 180 PFDPSPSDMQ HVFGLPPPPP APPQQQGDMG VGAFGGVGGD VGSWFADGAS IFAGQDPILA 240 FREQVMFDSM RRDAAGVDPT GGMAAMCHVD QHGGPSEDWQ QAYMSTDFLS ALIPSTPFPL 300 DDDQVTSRDD ELDKPSTARF SVHELEAVIQ DAMVDPVLAS PPPMVPPPPP PPHVHEPPVE 360 AAGSCSSVPP GGDCAAAAAA AGQEHGGLPG GAVNMG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_R | 1e-18 | 1 | 75 | 1 | 74 | Myocyte-specific enhancer factor 2B |
1tqe_S | 1e-18 | 1 | 75 | 1 | 74 | Myocyte-specific enhancer factor 2B |
5f28_A | 1e-18 | 1 | 78 | 1 | 79 | MEF2C |
5f28_B | 1e-18 | 1 | 78 | 1 | 79 | MEF2C |
5f28_C | 1e-18 | 1 | 78 | 1 | 79 | MEF2C |
5f28_D | 1e-18 | 1 | 78 | 1 | 79 | MEF2C |
6byy_A | 9e-19 | 1 | 75 | 1 | 74 | MEF2 CHIMERA |
6byy_B | 9e-19 | 1 | 75 | 1 | 74 | MEF2 CHIMERA |
6byy_C | 9e-19 | 1 | 75 | 1 | 74 | MEF2 CHIMERA |
6byy_D | 9e-19 | 1 | 75 | 1 | 74 | MEF2 CHIMERA |
6bz1_A | 9e-19 | 1 | 75 | 1 | 74 | MEF2 CHIMERA |
6bz1_B | 9e-19 | 1 | 75 | 1 | 74 | MEF2 CHIMERA |
6bz1_C | 9e-19 | 1 | 75 | 1 | 74 | MEF2 CHIMERA |
6bz1_D | 9e-19 | 1 | 75 | 1 | 74 | MEF2 CHIMERA |
6c9l_A | 1e-18 | 1 | 75 | 1 | 74 | Myocyte-specific enhancer factor 2B |
6c9l_B | 1e-18 | 1 | 75 | 1 | 74 | Myocyte-specific enhancer factor 2B |
6c9l_C | 1e-18 | 1 | 75 | 1 | 74 | Myocyte-specific enhancer factor 2B |
6c9l_D | 1e-18 | 1 | 75 | 1 | 74 | Myocyte-specific enhancer factor 2B |
6c9l_E | 1e-18 | 1 | 75 | 1 | 74 | Myocyte-specific enhancer factor 2B |
6c9l_F | 1e-18 | 1 | 75 | 1 | 74 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.4G093200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022681960.1 | 0.0 | agamous-like MADS-box protein AGL66 | ||||
TrEMBL | A0A368QSS0 | 0.0 | A0A368QSS0_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Db01574.1.p | 1e-174 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4953 | 33 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22130.1 | 3e-71 | AGAMOUS-like 104 |
Link Out ? help Back to Top | |
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Phytozome | Seita.4G093200.1.p |