PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.4G088500.1.p
Common NameLOC101780000, SETIT_007984mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 333aa    MW: 35192.7 Da    PI: 8.8366
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.4G088500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.5e-13128178255
                         HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         rr+h ++Er RR+++N+ ++ Lr l+P++   ++++ + a+i+  A++++k+L+
  Seita.4G088500.1.p 128 RRNHIAVERSRRRQVNEYLAALRALMPTS---YARRGDQASIVGGAIDFVKELE 178
                         899**************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.05E-12125182No hitNo description
SuperFamilySSF474591.31E-15125193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.135126177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-13128189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-10128178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.0E-10132183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MAALLEAVVF PPDHPRVPCC RSCGSSCVLG GYGVASAGEF EGIIEKGVVV VQENGELLVP  60
PPAHGSACCA WAGGAATSSW AGPVPSTTLA TSSARWPAHH HQPAVTRKPR RRRGTAARRS  120
ASEAESLRRN HIAVERSRRR QVNEYLAALR ALMPTSYARR GDQASIVGGA IDFVKELEHH  180
LQSLQAQRHP AAAAAGHGSE RFPGFFTLPQ YSTAEAANDV DDGASSSGGE RRPATRTGVA  240
DVEVAVSDGG HTTVKVLAPR RRRRMLLGLL LGMQRRGLTA LHLNATTTAD QMALYTFSLK  300
MGDEWQLSSA GDVAAAVHDI VAGMDTAEER AV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.4G088500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966795.10.0transcription factor bHLH94
TrEMBLK3Y1C00.0K3Y1C0_SETIT; Uncharacterized protein
STRINGSi007984m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104622843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.14e-31bHLH family protein