PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.4G086400.2.p | ||||||||
Common Name | LOC101757032, SETIT_006922mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | GRF | ||||||||
Protein Properties | Length: 321aa MW: 34326.3 Da PI: 9.2315 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 75.3 | 6.7e-24 | 86 | 129 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr++ + +k+CE+H+hrg+srsrk++e Seita.4G086400.2.p 86 DPEPGRCRRTDGKKWRCSREAHGESKYCEKHIHRGKSRSRKPVE 129 79***************************************998 PP | |||||||
2 | QLQ | 61 | 3.3e-21 | 13 | 47 | 2 | 36 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 FTa+Q+q+L++Q+l+yKy+a+++PvP++L+++++ Seita.4G086400.2.p 13 LFTASQWQELEHQALIYKYMASGAPVPHDLVLPLR 47 5*******************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.8E-9 | 12 | 48 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.143 | 13 | 48 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.1E-15 | 14 | 46 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.097 | 86 | 130 | IPR014977 | WRC domain |
Pfam | PF08879 | 4.9E-19 | 87 | 129 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MMLSGHGGGG RRLFTASQWQ ELEHQALIYK YMASGAPVPH DLVLPLRLAT GVDTAPSLAF 60 PPQTSPTLGY WGCYGAGAPF GRKAEDPEPG RCRRTDGKKW RCSREAHGES KYCEKHIHRG 120 KSRSRKPVEA VASSAATSPA AGAYRPSALS ISPPRAPDAA PTTFGHQQQH HLHYGASSGR 180 APAGPLQLHL DAASLHAASP PPSYHRYSHA HAHAHYATPP SLFPGSYSHG QSKELQDAEL 240 RRRHYLALGA DLSLDKPPAA AAATEEKPLR RFFDEWPREG GDARPWAMGA EDATQLSISI 300 PAASPSDLAA AAAARYHNGE * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.4G086400.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004964939.1 | 0.0 | growth-regulating factor 2 | ||||
Swissprot | Q6AWY7 | 4e-94 | GRF2_ORYSJ; Growth-regulating factor 2 | ||||
TrEMBL | A0A368QSF0 | 0.0 | A0A368QSF0_SETIT; Uncharacterized protein | ||||
STRING | Si006922m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 1e-41 | growth-regulating factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Seita.4G086400.2.p |
Entrez Gene | 101757032 |