PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.4G086300.1.p
Common NameSETIT_008089mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB
Protein Properties Length: 208aa    MW: 22082.9 Da    PI: 10.3715
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.4G086300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.51.3e-171461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WT  Ed++l+ +vk +G g W+ ++++ g++R++k+c++rw++yl
  Seita.4G086300.1.p 14 RGAWTSKEDDILAAYVKAHGEGKWREVPQKAGLRRCGKSCRLRWLNYL 61
                        89********************************************97 PP
2Myb_DNA-binding53.45.9e-1767111147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg+ + eE++l+++++k+lG++ W++Ia++++ gRt++++k++w++ 
  Seita.4G086300.1.p  67 RGNISDEEEDLIIRLHKLLGNR-WSLIAARLP-GRTDNEIKNYWNST 111
                         7899******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.2E-24664IPR009057Homeodomain-like
PROSITE profilePS5129418.251961IPR017930Myb domain
SuperFamilySSF466893.07E-2911108IPR009057Homeodomain-like
SMARTSM007176.4E-131363IPR001005SANT/Myb domain
PfamPF002491.2E-151461IPR001005SANT/Myb domain
CDDcd001671.22E-91661No hitNo description
PROSITE profilePS5129425.47562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-2465114IPR009057Homeodomain-like
SMARTSM007172.7E-1666114IPR001005SANT/Myb domain
PfamPF002492.5E-1567111IPR001005SANT/Myb domain
CDDcd001671.45E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MGRRACCAKE GLKRGAWTSK EDDILAAYVK AHGEGKWREV PQKAGLRRCG KSCRLRWLNY  60
LRPNIKRGNI SDEEEDLIIR LHKLLGNRWS LIAARLPGRT DNEIKNYWNS TLGRRAGAGG  120
GGSRVVVFGT PDTGSHSHAT PAASGSCENG AAAHRTDPDS AGSAAGTASA AAAVWAPKAV  180
RCTGRLFFHR DLLEAPPASE TPTAGGV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-26121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtControls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.4G086300.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1350191e-161AY135019.1 Zea mays PL transcription factor (pl) mRNA, pl-W22 allele, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964937.11e-148anthocyanin regulatory C1 protein
SwissprotP102902e-93MYBC_MAIZE; Anthocyanin regulatory C1 protein
TrEMBLA0A368QS511e-148A0A368QS51_SETIT; Uncharacterized protein
STRINGSi008089m1e-119(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.11e-56myb domain protein 5
Publications ? help Back to Top
  1. Chen B,Wang X,Hu Y,Wang Y,Lin Z
    Ectopic expression of a c1-I allele from maize inhibits pigment formation in the flower of transgenic tobacco.
    Mol. Biotechnol., 2004. 26(3): p. 187-92
    [PMID:15004287]
  2. Paz-Ares J,Ghosal D,Saedler H
    Molecular analysis of the C1-I allele from Zea mays: a dominant mutant of the regulatory C1 locus.
    EMBO J., 1990. 9(2): p. 315-21
    [PMID:2303027]
  3. Cone KC,Burr FA,Burr B
    Molecular analysis of the maize anthocyanin regulatory locus C1.
    Proc. Natl. Acad. Sci. U.S.A., 1986. 83(24): p. 9631-5
    [PMID:3025847]
  4. Paz-Ares J,Ghosal D,Wienand U,Peterson PA,Saedler H
    The regulatory c1 locus of Zea mays encodes a protein with homology to myb proto-oncogene products and with structural similarities to transcriptional activators.
    EMBO J., 1987. 6(12): p. 3553-8
    [PMID:3428265]
  5. Scheffler B, et al.
    Molecular analysis of C1 alleles in Zea mays defines regions involved in the expression of this regulatory gene.
    Mol. Gen. Genet., 1994. 242(1): p. 40-8
    [PMID:7904044]
  6. Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
    Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
    Plant J., 1994. 6(1): p. 21-30
    [PMID:7920701]
  7. Singer T,Gierl A,Peterson PA
    Three new dominant C1 suppressor alleles in Zea mays.
    Genet. Res., 1998. 71(2): p. 127-32
    [PMID:9717435]