PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.4G084600.1.p
Common NameLOC101784440, SETIT_005966mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HD-ZIP
Protein Properties Length: 700aa    MW: 75992.5 Da    PI: 6.2437
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.4G084600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.21.8e-201671156
                        TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                        r++ +++t+ q+++Le++F+++++p++++r+ L+++lgL+ rq+k+WFqNrR+++k
  Seita.4G084600.1.p 16 RKRYHRHTPRQIQQLEAMFKECQHPDENQRAALSRELGLDPRQIKFWFQNRRTQMK 71
                        789999***********************************************998 PP
2START144.69.3e-462144383206
                         HHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS
               START   3 aeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....k 78 
                         a +a++el+++a+a+e++W k +     e +n  ++ + f++ ++       ++e +r+s++v+m ++ lv  ++d++ +W e ++    +
  Seita.4G084600.1.p 214 AARAMDELIRLAQAGEQLWAKGVagdarETLNVATYDSLFAKPGGefrppdINVEGSRDSALVFMSAVALVDVFMDTN-KWMEFFPgivsR 303
                         6899*******************887776666666666665555589***99**************************.************ PP

                         EEEEEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEE CS
               START  79 aetlevissg.....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghsk 163
                         a t++v+ +g       l  m+ el  ++p+vp R+f f+Ry++q ++g w+++dvS+d +++        R ++lpSg+li ++sng+sk
  Seita.4G084600.1.p 304 AHTVDVLVNGlggrsDSLIMMYEELHIMTPAVPtREFSFLRYCKQIEQGLWAVADVSLDGQRDAHYGGIPSRTRRLPSGCLIADMSNGYSK 394
                         ***************99**********************************************87533445999***************** PP

                         EEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
               START 164 vtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                         vtwveh++ +  lp   l+r lv sg+a+ga +w+a+lqr ce+
  Seita.4G084600.1.p 395 VTWVEHMEIEQMLPvNVLYRNLVLSGAAFGAHRWLAALQRACER 438
                         **************9999************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.72E-20976IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.1E-221078IPR009057Homeodomain-like
PROSITE profilePS5007117.6211373IPR001356Homeobox domain
SMARTSM003894.6E-191477IPR001356Homeobox domain
PfamPF000465.4E-181671IPR001356Homeobox domain
CDDcd000864.05E-191674No hitNo description
PROSITE patternPS0002704871IPR017970Homeobox, conserved site
PROSITE profilePS5084845.995203441IPR002913START domain
SuperFamilySSF559618.24E-31203440No hitNo description
CDDcd088753.88E-105207437No hitNo description
SMARTSM002346.8E-30212438IPR002913START domain
PfamPF018524.5E-38214438IPR002913START domain
SuperFamilySSF559612.75E-18456691No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    Send to blast
MDFGDEPEGS DSQRQRKRYH RHTPRQIQQL EAMFKECQHP DENQRAALSR ELGLDPRQIK  60
FWFQNRRTQM KAQHERADNC FLRAENDKIR CENITMREAL KNVICPNCGG PPVTEDYFDE  120
QKLRMENARL KEELDRMSSY TSKYLGRPFT QMPPVPPMSV SSLDLSVGGM PGHGLGGGGP  180
SLDLDLLGGC PPGMPFQMPA PVTEMERPMM VDMAARAMDE LIRLAQAGEQ LWAKGVAGDA  240
RETLNVATYD SLFAKPGGEF RPPDINVEGS RDSALVFMSA VALVDVFMDT NKWMEFFPGI  300
VSRAHTVDVL VNGLGGRSDS LIMMYEELHI MTPAVPTREF SFLRYCKQIE QGLWAVADVS  360
LDGQRDAHYG GIPSRTRRLP SGCLIADMSN GYSKVTWVEH MEIEQMLPVN VLYRNLVLSG  420
AAFGAHRWLA ALQRACERFA SLAVLGASHH DLAGVTPEGK RSMMKLSQRM VSSFCASLSS  480
SALQRWTPLS GTTDVSVRVS SHRSADPGQP NGVVLSAATS IWLPVPGDHV FAFVRDETVR  540
SQWDVLSHGN QVQEVSRIPN GSNPGNCISL LRGLNANQNS MLILQESCTD ASGSLVVYSP  600
IDLPAANVVM SGEDPSGIPL LPSGFAILPD GRPGSGAAGA SSSAAPLASP PGCVVTVAFQ  660
ILVSNLPSSR LNAESVATVN GLIGTTVQQI KAALNCAGP*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.4G084600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0668130.0BT066813.2 Zea mays full-length cDNA clone ZM_BFb0073D09 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964922.10.0homeobox-leucine zipper protein ROC8
SwissprotQ69T580.0ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8
TrEMBLK3XVK80.0K3XVK8_SETIT; Uncharacterized protein
STRINGSi005966m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29123770
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2