PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.4G072000.1.p
Common NameLOC101779592, SETIT_006670mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family DBB
Protein Properties Length: 379aa    MW: 40227.7 Da    PI: 5.049
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.4G072000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.22.9e-07447542
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                         C+ ++  e++  C  ++  lC+ C +e H        H++vpl
  Seita.4G072000.1.p  4 QCNACGAAEARVLCCADEAALCAACDEEVHAAnklagkHQRVPL 47
                        7******99*********************66899999999986 PP
2zf-B_box29.31.8e-096698335
            zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHk 35
                         +kC+ ++e    +fC +++ llC+dC +++H 
  Seita.4G072000.1.p 66 VPKCDICQEASGYFFCLEDRALLCRDCDVAIHT 98
                        589****************************93 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.694147IPR000315B-box-type zinc finger
CDDcd000218.87E-9347No hitNo description
PfamPF006431.6E-5447IPR000315B-box-type zinc finger
SMARTSM003361.2E-9447IPR000315B-box-type zinc finger
SMARTSM003366.2E-1664111IPR000315B-box-type zinc finger
CDDcd000213.40E-967111No hitNo description
PfamPF006433.7E-76798IPR000315B-box-type zinc finger
PROSITE profilePS501198.74569111IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MKIQCNACGA AEARVLCCAD EAALCAACDE EVHAANKLAG KHQRVPLLSD ADAAAGPTAA  60
AAAPAVPKCD ICQEASGYFF CLEDRALLCR DCDVAIHTVN SFVSVHQRFL LTGVQVGLDP  120
ADPVPPIADK HVNAAGGSVH QPAKHLPRRS PTVQFSGEGS ASVPSKNVTN GGYARQNSVP  180
TAKTGVVDWT MHNSAIQSVE SPPKYMSEES PTLLQSSQTT AFSNQINSDS DRAYNLPFSG  240
GNGSDSLPDW PVDEFFNNSE YSPNFSFVEH GSSKSDNAKL GSAGGSPQCR LAEGFVAEEL  300
LGQVPGLVND EYMSRVPENS WTVPEVPSPP TASGLNWHGN LHFPAYDSTM FVPEISSLQG  360
SQNQFAVPCG FKRPRRQY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.4G072000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964830.10.0B-box zinc finger protein 22
TrEMBLK3XXL20.0K3XXL2_SETIT; Uncharacterized protein
STRINGSi006670m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17943382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.12e-54light-regulated zinc finger protein 1