PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.4G049500.1.p

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bHLH

Protein Properties

Length: 437aa MW: 43132.7 Da PI: 6.7314

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.4G049500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.1	5.6e-12	217	262	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Seita.4G049500.1.p 217 HSIAERLRRERIAERMKSLQELVPNA-----NKTDKASMLDEIIDYVKFLQ 262 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	9.41E-13	210	266	No hit	No description
SuperFamily	SSF47459	8.77E-17	210	272	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.282	212	261	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.2E-16	214	271	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.1E-9	217	262	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.9E-13	218	267	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence Send to blast
MQPSGREIAG GEGGPQQADD FFDQMLSTLP SAWADLGAGG NKSPWELAAG AEDAAVQAAF 60 GDESALLASR LRQHQIGGGD VKSSSSSPVM LQLSDLHRHG GGLAGGGAKE SGGFSPLPLF 120 TDRSAPAPEE MEGGFKSPNS AGGDHSLFNG FGMHGAASVQ PQFGQGGSMS PQSLGGPAAS 180 GGATPPAGGA ASSAGGGAAP PRQVRQRARR GQATDPHSIA ERLRRERIAE RMKSLQELVP 240 NANKTDKASM LDEIIDYVKF LQLQVKVLSM SRLGGAAGMA PLVASMSSEG NSNGGGGAKG 300 SAGAATKGNG NGSGSGENGG GGGGLRVAEN QVAKMMEEDM GTAMQYLQGK GLCLMPISLA 360 SAISSATSSA SLLSRPPPVL RHAAANSNPA APGGQLHDVN NGAAAAATSP ASASSAGGGD 420 DSRSVKELGA SGGGKQ*

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence Send to blast

MQPSGREIAG GEGGPQQADD FFDQMLSTLP SAWADLGAGG NKSPWELAAG AEDAAVQAAF  60
GDESALLASR LRQHQIGGGD VKSSSSSPVM LQLSDLHRHG GGLAGGGAKE SGGFSPLPLF  120
TDRSAPAPEE MEGGFKSPNS AGGDHSLFNG FGMHGAASVQ PQFGQGGSMS PQSLGGPAAS  180
GGATPPAGGA ASSAGGGAAP PRQVRQRARR GQATDPHSIA ERLRRERIAE RMKSLQELVP  240
NANKTDKASM LDEIIDYVKF LQLQVKVLSM SRLGGAAGMA PLVASMSSEG NSNGGGGAKG  300
SAGAATKGNG NGSGSGENGG GGGGLRVAEN QVAKMMEEDM GTAMQYLQGK GLCLMPISLA  360
SAISSATSSA SLLSRPPPVL RHAAANSNPA APGGQLHDVN NGAAAAATSP ASASSAGGGD  420
DSRSVKELGA SGGGKQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	221	226	RLRRER

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.4G049500.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT062076	2e-57	BT062076.1 Zea mays full-length cDNA clone ZM_BFb0212P11 mRNA, complete cds.
GenBank	KJ727938	2e-57	KJ727938.1 Zea mays clone pUT6033 bHLH transcription factor (bHLH88) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004964663.1	0.0	transcription factor bHLH82 isoform X2
Swissprot	Q9ZUG9	4e-71	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A368QQW1	0.0	A0A368QQW1_SETIT; Uncharacterized protein
STRING	Pavir.J04712.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1419	37	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30980.1	4e-37	LJRHL1-like 2

Link Out ? help Back to Top
Phytozome	Seita.4G049500.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]